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NC_012920.1(MT-ATP6):m.9035T>C AND MT-ATP6-related primary mitochondrial disease

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Apr 25, 2022
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002466594.3

Allele description [Variation Report for NC_012920.1(MT-ATP6):m.9035T>C]

NC_012920.1(MT-ATP6):m.9035T>C

Gene:
MT-ATP6:mitochondrially encoded ATP synthase 6 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Genomic location:
Preferred name:
NC_012920.1(MT-ATP6):m.9035T>C
HGVS:
  • NC_012920.1:m.9035T>C
  • NC_012920.1:g.9035T>C
  • m.9035T>C
Links:
dbSNP: rs1603222000
NCBI 1000 Genomes Browser:
rs1603222000

Condition(s)

Name:
MT-ATP6-related primary mitochondrial disease
Identifiers:

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV002762705Illumina Laboratory Services, Illumina
criteria provided, single submitter

(ICSLVariantClassificationCriteria RUGD 01 April 2020)
Uncertain significance
(Apr 25, 2022)
unknownclinical testing

PubMed (7)
[See all records that cite these PMIDs]

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Identification of ataxia-associated mtDNA mutations (m.4052T>C and m.9035T>C) and evaluation of their pathogenicity in transmitochondrial cybrids.

Sikorska M, Sandhu JK, Simon DK, Pathiraja V, Sodja C, Li Y, Ribecco-Lutkiewicz M, Lanthier P, Borowy-Borowski H, Upton A, Raha S, Pulst SM, Tarnopolsky MA.

Muscle Nerve. 2009 Sep;40(3):381-94. doi: 10.1002/mus.21355.

PubMed [citation]
PMID:
19626676

Adult-onset spinocerebellar ataxia syndromes due to MTATP6 mutations.

Pfeffer G, Blakely EL, Alston CL, Hassani A, Boggild M, Horvath R, Samuels DC, Taylor RW, Chinnery PF.

J Neurol Neurosurg Psychiatry. 2012 Sep;83(9):883-6. doi: 10.1136/jnnp-2012-302568. Epub 2012 May 10.

PubMed [citation]
PMID:
22577227
PMCID:
PMC4034166
See all PubMed Citations (7)

Details of each submission

From Illumina Laboratory Services, Illumina, SCV002762705.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (7)

Description

The MT-ATP6 m.9035T>C (p.Leu170Pro) mitochondrial missense variant results in a substitution of leucine at amino acid position 170 with proline. This variant has been reported in at least seven studies, in either a homoplasmic or heteroplasmic state in ten individuals with primary mitochondrial disease (Sikorska et al. 2009; Pfeffer et al. 2012; Ng et al. 2019; Garret et al. 2019; Haraux et al. 2019 ; Stendel et al. 2020; Capiau et al. 2022). A broad spectrum of clinical findings of varying severity are reported in affected individuals and most often include developmental delay, learning difficulties, progressive ataxia and neuropathy. At least two individuals were diagnosed with Leigh syndrome. The age of onset in affected individuals was highly variable, ranging from six months to over fifty years. Where available, heteroplasmy levels were reported to be greater than 90% in the blood samples of affected individuals suggesting a high phenotypic threshold level (Ng et al. 2019). This variant is not found in a homoplasmic state in version 3.1.2 of the Genome Aggregation Database. Functional studies in transmitochondrial cybrid cell lines generated from patient lymphoblast cells showed a significant reduction in basal ATP content and in oligomycin sensitive ATPase activity, compared to control lines. Based on the available evidence, the m.9035T>C (p.Leu170Pro) variant is classified as a variant of uncertain significance for MT-ATP6-related primary mitochondrial disease.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 8, 2024