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NM_000162.5(GCK):c.1099G>T (p.Val367Leu) AND not provided

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Aug 1, 2022
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002465963.2

Allele description [Variation Report for NM_000162.5(GCK):c.1099G>T (p.Val367Leu)]

NM_000162.5(GCK):c.1099G>T (p.Val367Leu)

Gene:
GCK:glucokinase [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
7p13
Genomic location:
Preferred name:
NM_000162.5(GCK):c.1099G>T (p.Val367Leu)
Other names:
NM_001354803.2:c.133G>T
HGVS:
  • NC_000007.14:g.44145651C>A
  • NG_008847.2:g.57520G>T
  • NM_000162.5:c.1099G>TMANE SELECT
  • NM_001354800.1:c.1099G>T
  • NM_001354801.1:c.88G>T
  • NM_001354802.1:c.-42G>T
  • NM_001354803.2:c.133G>T
  • NM_033507.3:c.1102G>T
  • NM_033508.3:c.1096G>T
  • NP_000153.1:p.Val367Leu
  • NP_001341729.1:p.Val367Leu
  • NP_001341730.1:p.Val30Leu
  • NP_001341732.1:p.Val45Leu
  • NP_277042.1:p.Val368Leu
  • NP_277043.1:p.Val366Leu
  • LRG_1074t1:c.1099G>T
  • LRG_1074t2:c.1102G>T
  • LRG_1074:g.57520G>T
  • LRG_1074p1:p.Val367Leu
  • LRG_1074p2:p.Val368Leu
  • NC_000007.13:g.44185250C>A
Protein change:
V30L
Molecular consequence:
  • NM_001354802.1:c.-42G>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_000162.5:c.1099G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354800.1:c.1099G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354801.1:c.88G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354803.2:c.133G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_033507.3:c.1102G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_033508.3:c.1096G>T - missense variant - [Sequence Ontology: SO:0001583]
Observations:
1

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: CN517202

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV002760208MVZ Dr. Eberhard & Partner Dortmund
criteria provided, single submitter

(ACMG Guidelines, 2015)
Uncertain significance
(Aug 1, 2022)
unknownclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownunknown1not providednot provided1not providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From MVZ Dr. Eberhard & Partner Dortmund, SCV002760208.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testing PubMed (1)

Description

In this missense variant Valin is replaced with Leucine at position 367 in GCK, a gene that has a low rate of benign missense variation and in which missense variants are a common mechanism of disease. This variant is not present in population databases and in silico algorithms predict a deleterious effect on the gene product. Though another substitution at the same position has been published (PMID: 34789499) that variant was only classified as likely pathogenic.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknown1not providednot provided1not providednot providednot provided

Last Updated: Sep 16, 2023