NM_000162.5(GCK):c.686del (p.Gly229fs) AND Maturity onset diabetes mellitus in young

Germline classification:: Uncertain risk allele (1 submission)
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV002463704.1

Allele description [Variation Report for NM_000162.5(GCK):c.686del (p.Gly229fs)]

NM_000162.5(GCK):c.686del (p.Gly229fs)

Gene:

GCK:glucokinase [Gene - OMIM - HGNC]

Variant type:

Deletion

Cytogenetic location:

7p13

Genomic location:

Preferred name:

NM_000162.5(GCK):c.686del (p.Gly229fs)

HGVS:

NC_000007.14:g.44147829del
NG_008847.2:g.55344del
NM_000162.5:c.686delMANE SELECT
NM_001354800.1:c.686del
NM_033507.3:c.689del
NM_033508.3:c.683del
NP_000153.1:p.Gly229fs
NP_001341729.1:p.Gly229fs
NP_277042.1:p.Gly230fs
NP_277043.1:p.Gly228fs
LRG_1074t1:c.686del
LRG_1074t2:c.689del
LRG_1074:g.55344del
LRG_1074p1:p.Gly229fs
LRG_1074p2:p.Gly230fs
NC_000007.13:g.44187428del
NM_000162.5:c.686delGMANE SELECT

Protein change:

G228fs

Links:

dbSNP: rs1554335164

NCBI 1000 Genomes Browser:

rs1554335164

Molecular consequence:

NM_000162.5:c.686del - frameshift variant - [Sequence Ontology: SO:0001589]
NM_001354800.1:c.686del - frameshift variant - [Sequence Ontology: SO:0001589]
NM_033507.3:c.689del - frameshift variant - [Sequence Ontology: SO:0001589]
NM_033508.3:c.683del - frameshift variant - [Sequence Ontology: SO:0001589]

Condition(s)

Name:: Maturity onset diabetes mellitus in young (MODY)
Synonyms:: Mason type diabetes
Identifiers:: MONDO: MONDO:0018911; MedGen: C0342276; Orphanet: 552; OMIM: 606391; Human Phenotype Ontology: HP:0004904

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PREDICTED: Molossus molossus tight junction protein 2 (TJP2), transcript variant...
PREDICTED: Molossus molossus tight junction protein 2 (TJP2), transcript variant X1, mRNA
gi|1910862515|ref|XM_036261388.1|

Nucleotide

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV002605135	Clinical Genomics, Uppaluri K&H Personalized Medicine Clinic	criteria provided, single submitter (K & H Uppaluri Personalized Medicine Clinic Variant Classification & Assertion Criteria_Updated V.1)	Uncertain risk allele	unknown	research	PubMed (6) [See all records that cite these PMIDs] 33129248, 27269892, 32375122, 31197960, 30257192, 29510678 Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV002605135

Clinical Genomics, Uppaluri K&H Personalized Medicine Clinic

criteria provided, single submitter

(K & H Uppaluri Personalized Medicine Clinic Variant Classification & Assertion Criteria_Updated V.1)

Uncertain risk allele

unknown

research

PubMed (6)
[See all records that cite these PMIDs]

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	unknown	unknown	not provided	not provided	not provided	not provided	not provided	research

Citations

PubMed

Clinical implications of the glucokinase impaired function - GCK MODY today.

Hulín J, Škopková M, Valkovičová T, Mikulajová S, Rosoľanková M, Papcun P, Gašperíková D, Staník J.

Physiol Res. 2020 Dec 22;69(6):995-1011. Epub 2020 Nov 2. Review.

PubMed [citation]

PMID:: 33129248
PMCID:: PMC8549873

GCK mutations in Chinese MODY2 patients: a family pedigree report and review of Chinese literature.

Ping Xiao Y, Hua Xu X, Lan Fang Y, Jiang L, Chen C, Liang L, Lin Wang C.

J Pediatr Endocrinol Metab. 2016 Aug 1;29(8):959-64. doi: 10.1515/jpem-2015-0354. Review.

PubMed [citation]

PMID:: 27269892

See all PubMed Citations (6)

Details of each submission

From Clinical Genomics, Uppaluri K&H Personalized Medicine Clinic, SCV002605135.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1		not provided	not provided	not provided	research	PubMed (6)

Description

Potent mutations in GCK gene is associated with poor secretion of insulin. Its associated with milder forms of diabetes, which can be controlled by diet . However, there is no sufficient evidence to ascertain the significance of rs1554335164 in MODY, yet.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	unknown	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: May 7, 2024

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