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NM_004360.5(CDH1):c.2401C>T (p.Pro801Ser) AND Hereditary cancer-predisposing syndrome

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Feb 10, 2020
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002450261.2

Allele description [Variation Report for NM_004360.5(CDH1):c.2401C>T (p.Pro801Ser)]

NM_004360.5(CDH1):c.2401C>T (p.Pro801Ser)

Gene:
CDH1:cadherin 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
16q22.1
Genomic location:
Preferred name:
NM_004360.5(CDH1):c.2401C>T (p.Pro801Ser)
HGVS:
  • NC_000016.10:g.68829759C>T
  • NG_008021.1:g.97468C>T
  • NM_001317184.2:c.2218C>T
  • NM_001317185.2:c.853C>T
  • NM_001317186.2:c.436C>T
  • NM_004360.5:c.2401C>TMANE SELECT
  • NP_001304113.1:p.Pro740Ser
  • NP_001304114.1:p.Pro285Ser
  • NP_001304115.1:p.Pro146Ser
  • NP_004351.1:p.Pro801Ser
  • NP_004351.1:p.Pro801Ser
  • LRG_301t1:c.2401C>T
  • LRG_301:g.97468C>T
  • LRG_301p1:p.Pro801Ser
  • NC_000016.9:g.68863662C>T
  • NM_004360.3:c.2401C>T
Protein change:
P146S
Molecular consequence:
  • NM_001317184.2:c.2218C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001317185.2:c.853C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001317186.2:c.436C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_004360.5:c.2401C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Hereditary cancer-predisposing syndrome
Synonyms:
Neoplastic Syndromes, Hereditary; Tumor predisposition; Cancer predisposition; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0015356; MeSH: D009386; MedGen: C0027672

Recent activity

Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV002732575Ambry Genetics
criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)		Uncertain significance
(Feb 10, 2020) 		germlineclinical testing

Citation Link

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Ambry Genetics, SCV002732575.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The p.P801S variant (also known as c.2401C>T), located in coding exon 15 of the CDH1 gene, results from a C to T substitution at nucleotide position 2401. The proline at codon 801 is replaced by serine, an amino acid with similar properties. This amino acid position is highly conserved in available vertebrate species. In addition, the in silico prediction for this alteration is inconclusive. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: May 1, 2024