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NM_000527.5(LDLR):c.108C>A (p.Asp36Glu) AND Cardiovascular phenotype

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Aug 18, 2022
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002446471.2

Allele description [Variation Report for NM_000527.5(LDLR):c.108C>A (p.Asp36Glu)]

NM_000527.5(LDLR):c.108C>A (p.Asp36Glu)

Gene:
LDLR:low density lipoprotein receptor [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
19p13.2
Genomic location:
Preferred name:
NM_000527.5(LDLR):c.108C>A (p.Asp36Glu)
HGVS:
  • NC_000019.10:g.11100263C>A
  • NG_009060.1:g.15883C>A
  • NM_000527.5:c.108C>AMANE SELECT
  • NM_001195798.2:c.108C>A
  • NM_001195799.2:c.108C>A
  • NM_001195800.2:c.108C>A
  • NM_001195803.2:c.108C>A
  • NP_000518.1:p.Asp36Glu
  • NP_000518.1:p.Asp36Glu
  • NP_001182727.1:p.Asp36Glu
  • NP_001182728.1:p.Asp36Glu
  • NP_001182729.1:p.Asp36Glu
  • NP_001182732.1:p.Asp36Glu
  • LRG_274t1:c.108C>A
  • LRG_274:g.15883C>A
  • LRG_274p1:p.Asp36Glu
  • NC_000019.9:g.11210939C>A
  • NM_000527.4:c.108C>A
  • c.108C>A
Protein change:
D36E
Links:
LDLR-LOVD, British Heart Foundation: LDLR_000780; dbSNP: rs373144619
NCBI 1000 Genomes Browser:
rs373144619
Molecular consequence:
  • NM_000527.5:c.108C>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001195798.2:c.108C>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001195799.2:c.108C>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001195800.2:c.108C>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001195803.2:c.108C>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Cardiovascular phenotype
Identifiers:
MedGen: CN230736

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV002736613Ambry Genetics
criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)
Uncertain significance
(Aug 18, 2022)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

The molecular basis of familial hypercholesterolemia in The Netherlands.

Fouchier SW, Defesche JC, Umans-Eckenhausen MW, Kastelein JP.

Hum Genet. 2001 Dec;109(6):602-15. Epub 2001 Nov 9.

PubMed [citation]
PMID:
11810272

Details of each submission

From Ambry Genetics, SCV002736613.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)

Description

The p.D36E variant (also known as c.108C>A), located in coding exon 2 of the LDLR gene, results from a C to A substitution at nucleotide position 108. The aspartic acid at codon 36 is replaced by glutamic acid, an amino acid with highly similar properties. This alteration, which is also known as p.D15E, has been reported in a familial hypercholesterolemia (FH) cohort (Fouchier SW et al. Hum Genet, 2001 Dec;109:602-15). This amino acid position is not well conserved in available vertebrate species. In addition, the in silico prediction for this alteration is inconclusive. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024