NM_174936.4(PCSK9):c.111C>A (p.Asp37Glu) AND Cardiovascular phenotype

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Feb 4, 2022
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV002437815.2

Allele description [Variation Report for NM_174936.4(PCSK9):c.111C>A (p.Asp37Glu)]

NM_174936.4(PCSK9):c.111C>A (p.Asp37Glu)

Gene:

PCSK9:proprotein convertase subtilisin/kexin type 9 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

1p32.3

Genomic location:

Preferred name:

NM_174936.4(PCSK9):c.111C>A (p.Asp37Glu)

Other names:

p.Asp37Glu

HGVS:

NC_000001.11:g.55039948C>A
NG_009061.1:g.5402C>A
NM_001407240.1:c.111C>A
NM_001407241.1:c.111C>A
NM_001407242.1:c.111C>A
NM_001407243.1:c.111C>A
NM_001407244.1:c.111C>A
NM_001407245.1:c.111C>A
NM_001407246.1:c.-624C>A
NM_001407247.1:c.111C>A
NM_174936.4:c.111C>AMANE SELECT
NP_001394169.1:p.Asp37Glu
NP_001394170.1:p.Asp37Glu
NP_001394171.1:p.Asp37Glu
NP_001394172.1:p.Asp37Glu
NP_001394173.1:p.Asp37Glu
NP_001394174.1:p.Asp37Glu
NP_001394176.1:p.Asp37Glu
NP_777596.2:p.Asp37Glu
NP_777596.2:p.Asp37Glu
LRG_275t1:c.111C>A
LRG_275:g.5402C>A
LRG_275p1:p.Asp37Glu
NC_000001.10:g.55505621C>A
NM_174936.3:c.111C>A
NR_110451.3:n.401C>A
NR_176318.1:n.401C>A
NR_176319.1:n.401C>A
NR_176320.1:n.401C>A
NR_176321.1:n.401C>A
NR_176322.1:n.401C>A
NR_176323.1:n.401C>A
NR_176324.1:n.401C>A

Protein change:

D37E

Molecular consequence:

NM_001407240.1:c.111C>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001407241.1:c.111C>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001407242.1:c.111C>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001407243.1:c.111C>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001407244.1:c.111C>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001407245.1:c.111C>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001407247.1:c.111C>A - missense variant - [Sequence Ontology: SO:0001583]
NM_174936.4:c.111C>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:: Cardiovascular phenotype
Identifiers:: MedGen: CN230736

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV002751273	Ambry Genetics	criteria provided, single submitter (Ambry Variant Classification Scheme 2023)	Uncertain significance (Feb 4, 2022)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV002751273

Ambry Genetics

criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)

Uncertain significance
(Feb 4, 2022)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Ambry Genetics, SCV002751273.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

The p.D37E variant (also known as c.111C>A), located in coding exon 1 of the PCSK9 gene, results from a C to A substitution at nucleotide position 111. The aspartic acid at codon 37 is replaced by glutamic acid, an amino acid with highly similar properties. This amino acid position is conserved. In addition, this alteration is predicted to be tolerated by in silico analysis. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: May 7, 2024

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