NM_002769.5(PRSS1):c.215G>C (p.Arg72Thr) AND Hereditary pancreatitis

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Sep 11, 2022
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV002432573.2

Allele description [Variation Report for NM_002769.5(PRSS1):c.215G>C (p.Arg72Thr)]

NM_002769.5(PRSS1):c.215G>C (p.Arg72Thr)

Genes:

TRB:T cell receptor beta locus [Gene - HGNC]
PRSS1:serine protease 1 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

7q34

Genomic location:

Preferred name:

NM_002769.5(PRSS1):c.215G>C (p.Arg72Thr)

HGVS:

NC_000007.14:g.142751788G>C
NG_001333.2:g.585456G>C
NG_008307.3:g.7305G>C
NM_002769.5:c.215G>CMANE SELECT
NP_002760.1:p.Arg72Thr
LRG_1013t1:c.215G>C
LRG_1013:g.7305G>C
LRG_1013p1:p.Arg72Thr
NC_000007.13:g.142459639G>C
NM_002769.4:c.215G>C
NR_172949.1:n.154G>C
NR_172950.1:n.68G>C

Protein change:

R72T

Molecular consequence:

NM_002769.5:c.215G>C - missense variant - [Sequence Ontology: SO:0001583]
NR_172949.1:n.154G>C - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_172950.1:n.68G>C - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Name:: Hereditary pancreatitis (PCTT)
Synonyms:: Hereditary chronic pancreatitis
Identifiers:: MONDO: MONDO:0008185; MedGen: C0238339; Orphanet: 676; OMIM: 167800

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV002728470	Ambry Genetics	criteria provided, single submitter (Ambry Variant Classification Scheme 2023)	Uncertain significance (Sep 11, 2022)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV002728470

Ambry Genetics

criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)

Uncertain significance
(Sep 11, 2022)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Ambry Genetics, SCV002728470.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

The p.R72T variant (also known as c.215G>C), located in coding exon 3 of the PRSS1 gene, results from a G to C substitution at nucleotide position 215. The arginine at codon 72 is replaced by threonine, an amino acid with similar properties. Based on data from ExAC, the C allele has an overall frequency of <0.01% (1/106208). In addition, this alteration is predicted to be deleterious by in silico analysis. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: May 1, 2024

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