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NM_003977.4(AIP):c.792C>T (p.Asn264=) AND Hereditary cancer-predisposing syndrome

Germline classification:
Likely benign (1 submission)
Last evaluated:
Jan 2, 2020
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002421007.2

Allele description [Variation Report for NM_003977.4(AIP):c.792C>T (p.Asn264=)]

NM_003977.4(AIP):c.792C>T (p.Asn264=)

Gene:
AIP:aryl hydrocarbon receptor interacting protein [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
11q13.2
Genomic location:
Preferred name:
NM_003977.4(AIP):c.792C>T (p.Asn264=)
HGVS:
  • NC_000011.10:g.67490792C>T
  • NG_008969.1:g.12759C>T
  • NM_001302959.2:c.615C>T
  • NM_001302960.2:c.784C>T
  • NM_003977.4:c.792C>TMANE SELECT
  • NP_001289888.1:p.Asn205=
  • NP_001289889.1:p.Arg262Cys
  • NP_003968.3:p.Asn264=
  • LRG_460t1:c.792C>T
  • LRG_460:g.12759C>T
  • NC_000011.9:g.67258263C>T
  • NM_003977.2:c.792C>T
  • NM_003977.4:c.792C>T
Protein change:
R262C
Links:
dbSNP: rs780707460
NCBI 1000 Genomes Browser:
rs780707460
Molecular consequence:
  • NM_001302960.2:c.784C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001302959.2:c.615C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_003977.4:c.792C>T - synonymous variant - [Sequence Ontology: SO:0001819]

Condition(s)

Name:
Hereditary cancer-predisposing syndrome
Synonyms:
Neoplastic Syndromes, Hereditary; Tumor predisposition; Cancer predisposition; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0015356; MeSH: D009386; MedGen: C0027672

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Assertion and evidence details

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Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV002676979Ambry Genetics
criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)		Likely benign
(Jan 2, 2020) 		germlineclinical testing

Citation Link

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Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Ambry Genetics, SCV002676979.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

This alteration is classified as likely benign based on a combination of the following: seen in unaffected individuals, population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024