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NM_000527.5(LDLR):c.2055G>A (p.Pro685=) AND Cardiovascular phenotype

Germline classification:
Likely benign (1 submission)
Last evaluated:
May 31, 2019
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002420682.2

Allele description [Variation Report for NM_000527.5(LDLR):c.2055G>A (p.Pro685=)]

NM_000527.5(LDLR):c.2055G>A (p.Pro685=)

Gene:
LDLR:low density lipoprotein receptor [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
19p13.2
Genomic location:
Preferred name:
NM_000527.5(LDLR):c.2055G>A (p.Pro685=)
HGVS:
  • NC_000019.10:g.11120437G>A
  • NG_009060.1:g.36057G>A
  • NM_000527.5:c.2055G>AMANE SELECT
  • NM_001195798.2:c.2055G>A
  • NM_001195799.2:c.1932G>A
  • NM_001195800.2:c.1551G>A
  • NM_001195803.2:c.1606+204G>A
  • NP_000518.1:p.Pro685=
  • NP_000518.1:p.Pro685=
  • NP_001182727.1:p.Pro685=
  • NP_001182728.1:p.Pro644=
  • NP_001182729.1:p.Pro517=
  • LRG_274t1:c.2055G>A
  • LRG_274:g.36057G>A
  • LRG_274p1:p.Pro685=
  • NC_000019.9:g.11231113G>A
  • NM_000527.4:c.2055G>A
Links:
dbSNP: rs149126953
NCBI 1000 Genomes Browser:
rs149126953
Molecular consequence:
  • NM_001195803.2:c.1606+204G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_000527.5:c.2055G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001195798.2:c.2055G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001195799.2:c.1932G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001195800.2:c.1551G>A - synonymous variant - [Sequence Ontology: SO:0001819]

Condition(s)

Name:
Cardiovascular phenotype
Identifiers:
MedGen: CN230736

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Assertion and evidence details

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Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV002725557Ambry Genetics
criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)		Likely benign
(May 31, 2019) 		germlineclinical testing

Citation Link

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Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Ambry Genetics, SCV002725557.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

This alteration is classified as likely benign based on a combination of the following: seen in unaffected individuals, population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024