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NM_000551.4(VHL):c.7C>G (p.Arg3Gly) AND Hereditary cancer-predisposing syndrome

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Mar 25, 2021
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002418995.2

Allele description [Variation Report for NM_000551.4(VHL):c.7C>G (p.Arg3Gly)]

NM_000551.4(VHL):c.7C>G (p.Arg3Gly)

Gene:
VHL:von Hippel-Lindau tumor suppressor [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
3p25.3
Genomic location:
Preferred name:
NM_000551.4(VHL):c.7C>G (p.Arg3Gly)
HGVS:
  • NC_000003.12:g.10141854C>G
  • NG_008212.3:g.5220C>G
  • NM_000551.4:c.7C>GMANE SELECT
  • NM_001354723.2:c.7C>G
  • NM_198156.3:c.7C>G
  • NP_000542.1:p.Arg3Gly
  • NP_001341652.1:p.Arg3Gly
  • NP_937799.1:p.Arg3Gly
  • LRG_322t1:c.7C>G
  • LRG_322:g.5220C>G
  • NC_000003.11:g.10183538C>G
  • NM_000551.3:c.7C>G
Protein change:
R3G
Links:
dbSNP: rs878854130
NCBI 1000 Genomes Browser:
rs878854130
Molecular consequence:
  • NM_000551.4:c.7C>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354723.2:c.7C>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_198156.3:c.7C>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Hereditary cancer-predisposing syndrome
Synonyms:
Neoplastic Syndromes, Hereditary; Tumor predisposition; Cancer predisposition; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0015356; MeSH: D009386; MedGen: C0027672

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Assertion and evidence details

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Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV002678659Ambry Genetics
criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)		Uncertain significance
(Mar 25, 2021) 		germlineclinical testing

Citation Link

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Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Ambry Genetics, SCV002678659.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The p.R3G variant (also known as c.7C>G), located in coding exon 1 of the VHL gene, results from a C to G substitution at nucleotide position 7. The arginine at codon 3 is replaced by glycine, an amino acid with dissimilar properties. This amino acid position is not well conserved in available vertebrate species. In addition, this alteration is predicted to be tolerated by in silico analysis. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024