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NM_000051.4(ATM):c.7958T>C (p.Ile2653Thr) AND Hereditary cancer-predisposing syndrome

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
May 18, 2022
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002416880.9

Allele description [Variation Report for NM_000051.4(ATM):c.7958T>C (p.Ile2653Thr)]

NM_000051.4(ATM):c.7958T>C (p.Ile2653Thr)

Genes:
ATM:ATM serine/threonine kinase [Gene - OMIM - HGNC]
C11orf65:chromosome 11 open reading frame 65 [Gene - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
11q22.3
Genomic location:
Preferred name:
NM_000051.4(ATM):c.7958T>C (p.Ile2653Thr)
HGVS:
  • NC_000011.10:g.108333916T>C
  • NG_009830.1:g.116085T>C
  • NG_054724.1:g.140917A>G
  • NM_000051.4:c.7958T>CMANE SELECT
  • NM_001330368.2:c.641-24845A>G
  • NM_001351110.2:c.*38+1304A>G
  • NM_001351834.2:c.7958T>C
  • NP_000042.3:p.Ile2653Thr
  • NP_000042.3:p.Ile2653Thr
  • NP_001338763.1:p.Ile2653Thr
  • LRG_135t1:c.7958T>C
  • LRG_135:g.116085T>C
  • LRG_135p1:p.Ile2653Thr
  • NC_000011.9:g.108204643T>C
  • NM_000051.3:c.7958T>C
Protein change:
I2653T
Molecular consequence:
  • NM_001330368.2:c.641-24845A>G - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001351110.2:c.*38+1304A>G - intron variant - [Sequence Ontology: SO:0001627]
  • NM_000051.4:c.7958T>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001351834.2:c.7958T>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Hereditary cancer-predisposing syndrome
Synonyms:
Neoplastic Syndromes, Hereditary; Tumor predisposition; Cancer predisposition; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0015356; MeSH: D009386; MedGen: C0027672

Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV002677995Ambry Genetics
criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)		Uncertain significance
(May 18, 2022) 		germlineclinical testing

Citation Link

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Ambry Genetics, SCV002677995.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The p.I2653T variant (also known as c.7958T>C), located in coding exon 53 of the ATM gene, results from a T to C substitution at nucleotide position 7958. The isoleucine at codon 2653 is replaced by threonine, an amino acid with similar properties. This amino acid position is well conserved in available vertebrate species. In addition, this alteration is predicted to be deleterious by in silico analysis. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 26, 2024