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NM_000465.4(BARD1):c.2232T>G (p.Asn744Lys) AND Hereditary cancer-predisposing syndrome

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Dec 10, 2015
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002416322.2

Allele description [Variation Report for NM_000465.4(BARD1):c.2232T>G (p.Asn744Lys)]

NM_000465.4(BARD1):c.2232T>G (p.Asn744Lys)

Gene:
BARD1:BRCA1 associated RING domain 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
2q35
Genomic location:
Preferred name:
NM_000465.4(BARD1):c.2232T>G (p.Asn744Lys)
HGVS:
  • NC_000002.12:g.214728778A>C
  • NG_012047.3:g.85934T>G
  • NM_000465.4:c.2232T>GMANE SELECT
  • NM_001282543.2:c.2175T>G
  • NM_001282545.2:c.879T>G
  • NM_001282548.2:c.822T>G
  • NM_001282549.2:c.693T>G
  • NP_000456.2:p.Asn744Lys
  • NP_001269472.1:p.Asn725Lys
  • NP_001269474.1:p.Asn293Lys
  • NP_001269477.1:p.Asn274Lys
  • NP_001269478.1:p.Asn231Lys
  • LRG_297t1:c.2232T>G
  • LRG_297:g.85934T>G
  • LRG_297p1:p.Asn744Lys
  • NC_000002.11:g.215593502A>C
  • NG_012047.2:g.85927T>G
  • NM_000465.2:c.2232T>G
  • NM_000465.3:c.2232T>G
  • NR_104212.2:n.2197T>G
  • NR_104215.2:n.2140T>G
  • NR_104216.2:n.1396T>G
Protein change:
N231K
Links:
dbSNP: rs1692202278
NCBI 1000 Genomes Browser:
rs1692202278
Molecular consequence:
  • NM_000465.4:c.2232T>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001282543.2:c.2175T>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001282545.2:c.879T>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001282548.2:c.822T>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001282549.2:c.693T>G - missense variant - [Sequence Ontology: SO:0001583]
  • NR_104212.2:n.2197T>G - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_104215.2:n.2140T>G - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_104216.2:n.1396T>G - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Name:
Hereditary cancer-predisposing syndrome
Synonyms:
Neoplastic Syndromes, Hereditary; Tumor predisposition; Cancer predisposition; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0015356; MeSH: D009386; MedGen: C0027672

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV002725413Ambry Genetics
criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)
Uncertain significance
(Dec 10, 2015)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Ambry Genetics, SCV002725413.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The p.N744K variant (also known as c.2232T>G), located in coding exon 11 of the BARD1 gene, results from a T to G substitution at nucleotide position 2232. The asparagine at codon 744 is replaced by lysine, an amino acid with similar properties. This variant was not reported in population based cohorts in the following databases: Database of Single Nucleotide Polymorphisms (dbSNP), NHLBI Exome Sequencing Project (ESP), and 1000 Genomes Project. In the ESP, this variant was not observed in 6503 samples (13006 alleles) with coverage at this position. To date, this alteration has been detected with an allele frequency of approximately 0.001% (greater than 120000 alleles tested) in our clinical cohort. This amino acid position is poorly conserved in available vertebrate species. In addition, this alteration is predicted to be tolerated by in silico analysis. Since supporting evidence is limited at this time, the clinical significance of p.N744K remains unclear.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024