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NM_007373.4(SHOC2):c.171C>T (p.Ser57=) AND Cardiovascular phenotype

Germline classification:
Likely benign (1 submission)
Last evaluated:
Apr 28, 2021
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002413694.2

Allele description [Variation Report for NM_007373.4(SHOC2):c.171C>T (p.Ser57=)]

NM_007373.4(SHOC2):c.171C>T (p.Ser57=)

Gene:
SHOC2:SHOC2 leucine rich repeat scaffold protein [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
10q25.2
Genomic location:
Preferred name:
NM_007373.4(SHOC2):c.171C>T (p.Ser57=)
HGVS:
  • NC_000010.11:g.110964529C>T
  • NG_028922.1:g.49987C>T
  • NM_001269039.3:c.171C>T
  • NM_001324336.2:c.171C>T
  • NM_001324337.2:c.171C>T
  • NM_007373.4:c.171C>TMANE SELECT
  • NP_001255968.1:p.Ser57=
  • NP_001311265.1:p.Ser57=
  • NP_001311266.1:p.Ser57=
  • NP_031399.2:p.Ser57=
  • NP_031399.2:p.Ser57=
  • LRG_753t1:c.171C>T
  • LRG_753:g.49987C>T
  • LRG_753p1:p.Ser57=
  • NC_000010.10:g.112724287C>T
  • NM_007373.3:c.171C>T
  • p.Ser57Ser
Links:
dbSNP: rs1554857645
NCBI 1000 Genomes Browser:
rs1554857645
Molecular consequence:
  • NM_001269039.3:c.171C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001324336.2:c.171C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001324337.2:c.171C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_007373.4:c.171C>T - synonymous variant - [Sequence Ontology: SO:0001819]

Condition(s)

Name:
Cardiovascular phenotype
Identifiers:
MedGen: CN230736

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Assertion and evidence details

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Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV002715984Ambry Genetics
criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)		Likely benign
(Apr 28, 2021) 		germlineclinical testing

Citation Link

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Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Ambry Genetics, SCV002715984.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

This alteration is classified as likely benign based on a combination of the following: seen in unaffected individuals, population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024