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NM_001378454.1(ALMS1):c.10630A>G (p.Arg3544Gly) AND Cardiovascular phenotype

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Dec 21, 2021
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002406512.2

Allele description [Variation Report for NM_001378454.1(ALMS1):c.10630A>G (p.Arg3544Gly)]

NM_001378454.1(ALMS1):c.10630A>G (p.Arg3544Gly)

Gene:
ALMS1:ALMS1 centrosome and basal body associated protein [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
2p13.1
Genomic location:
Preferred name:
NM_001378454.1(ALMS1):c.10630A>G (p.Arg3544Gly)
HGVS:
  • NC_000002.12:g.73572507A>G
  • NG_011690.1:g.191755A>G
  • NM_001378454.1:c.10630A>GMANE SELECT
  • NM_015120.4:c.10633A>G
  • NP_001365383.1:p.Arg3544Gly
  • NP_055935.4:p.Arg3545Gly
  • LRG_741t1:c.10633A>G
  • LRG_741:g.191755A>G
  • LRG_741p1:p.Arg3545Gly
  • NC_000002.11:g.73799634A>G
Protein change:
R3544G
Links:
dbSNP: rs773075850
NCBI 1000 Genomes Browser:
rs773075850
Molecular consequence:
  • NM_001378454.1:c.10630A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_015120.4:c.10633A>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Cardiovascular phenotype
Identifiers:
MedGen: CN230736

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Assertion and evidence details

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Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV002716265Ambry Genetics
criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)		Uncertain significance
(Dec 21, 2021) 		germlineclinical testing

Citation Link

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Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Ambry Genetics, SCV002716265.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The p.R3545G variant (also known as c.10633A>G), located in coding exon 16 of the ALMS1 gene, results from an A to G substitution at nucleotide position 10633. The arginine at codon 3545 is replaced by glycine, an amino acid with dissimilar properties. This amino acid position is well conserved in available vertebrate species. In addition, the in silico prediction for this alteration is inconclusive. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024