NM_003977.4(AIP):c.167G>A (p.Arg56His) AND Hereditary cancer-predisposing syndrome

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: May 24, 2024
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV002402751.3

Allele description [Variation Report for NM_003977.4(AIP):c.167G>A (p.Arg56His)]

NM_003977.4(AIP):c.167G>A (p.Arg56His)

Genes:

LOC130006206:ATAC-STARR-seq lymphoblastoid active region 5107 [Gene]
AIP:aryl hydrocarbon receptor interacting protein [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

11q13.2

Genomic location:

Preferred name:

NM_003977.4(AIP):c.167G>A (p.Arg56His)

HGVS:

NC_000011.10:g.67487073G>A
NG_008969.1:g.9040G>A
NM_001302959.2:c.-11G>A
NM_001302960.2:c.167G>A
NM_003977.4:c.167G>AMANE SELECT
NP_001289889.1:p.Arg56His
NP_003968.3:p.Arg56His
LRG_460t1:c.167G>A
LRG_460:g.9040G>A
NC_000011.9:g.67254544G>A
NM_003977.2:c.167G>A
NM_003977.3:c.167G>A

Protein change:

R56H

Links:

dbSNP: rs756242133

NCBI 1000 Genomes Browser:

rs756242133

Molecular consequence:

NM_001302959.2:c.-11G>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
NM_001302960.2:c.167G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_003977.4:c.167G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:: Hereditary cancer-predisposing syndrome
Synonyms:: Neoplastic Syndromes, Hereditary; Tumor predisposition; Cancer predisposition; See all synonyms [MedGen]
Identifiers:: MONDO: MONDO:0015356; MeSH: D009386; MedGen: C0027672

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV002714493	Ambry Genetics	criteria provided, single submitter (Ambry Variant Classification Scheme 2023)	Uncertain significance (May 24, 2024)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV002714493

Ambry Genetics

criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)

Uncertain significance
(May 24, 2024)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Ambry Genetics, SCV002714493.3

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

The p.R56H variant (also known as c.167G>A), located in coding exon 2 of the AIP gene, results from a G to A substitution at nucleotide position 167. The arginine at codon 56 is replaced by histidine, an amino acid with highly similar properties. This amino acid position is not well conserved in available vertebrate species. In addition, this alteration is predicted to be tolerated by in silico analysis. Based on the available evidence, the clinical significance of this variant remains unclear.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 29, 2024

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