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NM_001267550.2(TTN):c.104515C>T (p.Arg34839Ter) AND Cardiovascular phenotype

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Oct 4, 2022
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002397233.2

Allele description [Variation Report for NM_001267550.2(TTN):c.104515C>T (p.Arg34839Ter)]

NM_001267550.2(TTN):c.104515C>T (p.Arg34839Ter)

Genes:
TTN-AS1:TTN antisense RNA 1 [Gene - HGNC]
TTN:titin [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
2q31.2
Genomic location:
Preferred name:
NM_001267550.2(TTN):c.104515C>T (p.Arg34839Ter)
HGVS:
  • NC_000002.12:g.178532100G>A
  • NG_011618.3:g.303703C>T
  • NG_051363.1:g.14274G>A
  • NM_001256850.1:c.99592C>T
  • NM_001267550.2:c.104515C>TMANE SELECT
  • NM_003319.4:c.77320C>T
  • NM_133378.4:c.96811C>T
  • NM_133432.3:c.77695C>T
  • NM_133437.4:c.77896C>T
  • NP_001243779.1:p.Arg33198Ter
  • NP_001254479.2:p.Arg34839Ter
  • NP_003310.4:p.Arg25774Ter
  • NP_596869.4:p.Arg32271Ter
  • NP_597676.3:p.Arg25899Ter
  • NP_597681.4:p.Arg25966Ter
  • LRG_391:g.303703C>T
  • NC_000002.11:g.179396827G>A
  • NM_001256850.1:c.99592C>T
  • NM_003319.4:c.77320C>T
  • NM_133378.4:c.96811C>T
Protein change:
R25774*
Links:
dbSNP: rs1553488049
NCBI 1000 Genomes Browser:
rs1553488049
Molecular consequence:
  • NM_001256850.1:c.99592C>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001267550.2:c.104515C>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_003319.4:c.77320C>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_133378.4:c.96811C>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_133432.3:c.77695C>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_133437.4:c.77896C>T - nonsense - [Sequence Ontology: SO:0001587]

Condition(s)

Name:
Cardiovascular phenotype
Identifiers:
MedGen: CN230736

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV002669939Ambry Genetics
criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)
Likely pathogenic
(Oct 4, 2022)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Ambry Genetics, SCV002669939.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The p.R25774* variant (also known as c.77320C>T), located in coding exon 185 of the TTN gene, results from a C to T substitution at nucleotide position 77320. This changes the amino acid from an arginine to a stop codon within coding exon 185. This exon is located in the M-band region of the N2-B isoform of the titin protein and is constitutively expressed in TTN transcripts (percent spliced in or PSI 100%). This variant is considered to be rare based on population cohorts in the Genome Aggregation Database (gnomAD). This alteration is expected to result in loss of function by premature protein truncation or nonsense-mediated mRNA decay. While truncating variants in TTN are present in 1-3% of the general population, truncating variants in the M-band have been reported in association with autosomal recessive titinopathies, primarily presenting with skeletal myopathy phenotypes (Ceyhan-Birsoy O et al. Neurology. 2013 Oct 1;81(14):1205-14; De Cid R et al. Neurology. 2015;85(24):2126-35). In addition, regardless of their position, TTN truncating variants encoded in constitutive exons (PSI >90%) have been found to be significantly associated with dilated cardiomyopathy (DCM), though truncating variants in the A-band are the most common cause of DCM (Herman DS et al. N. Engl. J. Med., 2012 Feb;366:619-28; Roberts AM et al. Sci Transl Med, 2015 Jan;7:270ra6; Schafer S et al. Nat. Genet., 2017 01;49:46-53). Based on the majority of available evidence to date, this variant is likely to be pathogenic in association with autosomal recessive titinopathy; however, the clinical significance of this alteration with respect to cardiomyopathy remains unclear.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024