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NM_001370259.2(MEN1):c.1387G>A (p.Glu463Lys) AND Hereditary cancer-predisposing syndrome

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Aug 29, 2022
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002393540.2

Allele description [Variation Report for NM_001370259.2(MEN1):c.1387G>A (p.Glu463Lys)]

NM_001370259.2(MEN1):c.1387G>A (p.Glu463Lys)

Gene:
MEN1:menin 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
11q13.1
Genomic location:
Preferred name:
NM_001370259.2(MEN1):c.1387G>A (p.Glu463Lys)
HGVS:
  • NC_000011.10:g.64804780C>T
  • NG_008929.1:g.11515G>A
  • NG_033040.1:g.3462G>A
  • NM_000244.4:c.1402G>A
  • NM_001370251.2:c.1513G>A
  • NM_001370259.2:c.1387G>AMANE SELECT
  • NM_001370260.2:c.1387G>A
  • NM_001370261.2:c.1387G>A
  • NM_001370262.2:c.1282G>A
  • NM_001370263.2:c.1282G>A
  • NM_130799.3:c.1387G>A
  • NM_130800.3:c.1402G>A
  • NM_130801.3:c.1402G>A
  • NM_130802.3:c.1402G>A
  • NM_130803.3:c.1402G>A
  • NM_130804.3:c.1402G>A
  • NP_000235.3:p.Glu468Lys
  • NP_001357180.2:p.Glu505Lys
  • NP_001357188.2:p.Glu463Lys
  • NP_001357189.2:p.Glu463Lys
  • NP_001357190.2:p.Glu463Lys
  • NP_001357191.2:p.Glu428Lys
  • NP_001357192.2:p.Glu428Lys
  • NP_570711.1:p.Glu463Lys
  • NP_570711.2:p.Glu463Lys
  • NP_570712.2:p.Glu468Lys
  • NP_570713.2:p.Glu468Lys
  • NP_570714.2:p.Glu468Lys
  • NP_570715.2:p.Glu468Lys
  • NP_570716.2:p.Glu468Lys
  • LRG_509t2:c.1387G>A
  • LRG_509:g.11515G>A
  • LRG_509p2:p.Glu463Lys
  • NC_000011.9:g.64572252C>T
  • NM_130799.2:c.1387G>A
Protein change:
E428K
Links:
dbSNP: rs748102589
NCBI 1000 Genomes Browser:
rs748102589
Molecular consequence:
  • NM_000244.4:c.1402G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001370251.2:c.1513G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001370259.2:c.1387G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001370260.2:c.1387G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001370261.2:c.1387G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001370262.2:c.1282G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001370263.2:c.1282G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_130799.3:c.1387G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_130800.3:c.1402G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_130801.3:c.1402G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_130802.3:c.1402G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_130803.3:c.1402G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_130804.3:c.1402G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Hereditary cancer-predisposing syndrome
Synonyms:
Neoplastic Syndromes, Hereditary; Tumor predisposition; Cancer predisposition; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0015356; MeSH: D009386; MedGen: C0027672

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV002695937Ambry Genetics
criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)		Uncertain significance
(Aug 29, 2022) 		germlineclinical testing

Citation Link

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Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Ambry Genetics, SCV002695937.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The p.E463K variant (also known as c.1387G>A), located in coding exon 9 of the MEN1 gene, results from a G to A substitution at nucleotide position 1387. The glutamic acid at codon 463 is replaced by lysine, an amino acid with similar properties. This amino acid position is well conserved in available vertebrate species. In addition, the in silico prediction for this alteration is inconclusive. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024