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NM_000371.4(TTR):c.157T>C (p.Phe53Leu) AND Cardiovascular phenotype

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Jan 10, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002390108.10

Allele description [Variation Report for NM_000371.4(TTR):c.157T>C (p.Phe53Leu)]

NM_000371.4(TTR):c.157T>C (p.Phe53Leu)

Gene:
TTR:transthyretin [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
18q12.1
Genomic location:
Preferred name:
NM_000371.4(TTR):c.157T>C (p.Phe53Leu)
Other names:
F33L
HGVS:
  • NC_000018.10:g.31592983T>C
  • NG_009490.1:g.6217T>C
  • NM_000371.4:c.157T>CMANE SELECT
  • NP_000362.1:p.Phe53Leu
  • NP_000362.1:p.Phe53Leu
  • LRG_416t1:c.157T>C
  • LRG_416:g.6217T>C
  • LRG_416p1:p.Phe53Leu
  • NC_000018.9:g.29172946T>C
  • NM_000371.3:c.157T>C
  • P02766:p.Phe53Leu
Protein change:
F53L; PHE33LEU
Links:
UniProtKB: P02766#VAR_007556; OMIM: 176300.0040; dbSNP: rs121918068
NCBI 1000 Genomes Browser:
rs121918068
Molecular consequence:
  • NM_000371.4:c.157T>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Cardiovascular phenotype
Identifiers:
MedGen: CN230736

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV002703386Ambry Genetics
criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)
Pathogenic
(Jan 10, 2023)
germlineclinical testing

PubMed (9)
[See all records that cite these PMIDs]

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

A Swedish family with the rare Phe33Leu transthyretin mutation.

Holmgren G, Hellman U, Jonasson J, Lundgren HE, Westermark P, Suhr OB.

Amyloid. 2005 Sep;12(3):189-92.

PubMed [citation]
PMID:
16194875

Transthyretin RNA profiling in livers from transplanted patients affected by familial amyloidotic polyneuropathy, and identification of a dual transcription start point.

Rimessi P, Spitali P, Ando Y, Mazzaferro V, Pastorelli F, Tassinari CA, Calzolari E, Salvi F, Ferlini A.

Liver Int. 2006 Mar;26(2):211-20.

PubMed [citation]
PMID:
16448460
See all PubMed Citations (9)

Details of each submission

From Ambry Genetics, SCV002703386.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (9)

Description

The p.F53L pathogenic mutation (also known as c.157T>C), located in coding exon 2 of the TTR gene, results from a T to C substitution at nucleotide position 157. The phenylalanine at codon 53 is replaced by leucine, an amino acid with highly similar properties. This alteration, which is also known as p.F33L, was first reported in a Polish-American individual who developed symptoms of autonomic dysfunction and neuropathy at 53 years of age; a sural nerve biopsy showed the presence of amyloid and immunohistochemistry revealed transthyretin (Ii S et al. Neurology, 1991 Jun;41:893-8). This variant has been identified in individuals of Polish, Swedish, Ashkenazi Jewish, and Asian ancestry with symptoms of familial amyloidotic polyneuropathy (Harding J et al. Biochim Biophys Acta. 1991; 1097(3):183-6; Holmgren G et al. Amyloid. 2005; 12(3):189-92; Leibou L et al. Isr Med Assoc J. 2012; 14(11):662-5; Chen CH et al. J Formos Med Assoc. 2014; 113(8):575-6). A functional study of urea gradients found this alteration resulted in decreased conformational stability of the monomer molecule (Altland K et al. Electrophoresis. 2007; 28(12):2053-64). This variant is considered to be rare based on population cohorts in the Genome Aggregation Database (gnomAD). In addition, this alteration is predicted to be deleterious by BayesDel in silico analysis. Based on the supporting evidence, this alteration is interpreted as a disease-causing mutation.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 10, 2024