NM_000136.3(FANCC):c.1286A>T (p.Tyr429Phe) AND Hereditary cancer-predisposing syndrome

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Sep 20, 2022
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV002383190.2

Allele description [Variation Report for NM_000136.3(FANCC):c.1286A>T (p.Tyr429Phe)]

NM_000136.3(FANCC):c.1286A>T (p.Tyr429Phe)

Genes:

FANCC:FA complementation group C [Gene - OMIM - HGNC]
AOPEP:aminopeptidase O (putative) [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

9q22.32

Genomic location:

Preferred name:

NM_000136.3(FANCC):c.1286A>T (p.Tyr429Phe)

HGVS:

NC_000009.12:g.95111506T>A
NG_011707.1:g.211204A>T
NG_027833.2:g.389809T>A
NM_000136.3:c.1286A>TMANE SELECT
NM_001243743.2:c.1286A>T
NM_001243744.2:c.1286A>T
NP_000127.2:p.Tyr429Phe
NP_000127.2:p.Tyr429Phe
NP_001230672.1:p.Tyr429Phe
NP_001230673.1:p.Tyr429Phe
LRG_497t1:c.1286A>T
LRG_497:g.211204A>T
LRG_497p1:p.Tyr429Phe
NC_000009.11:g.97873788T>A
NM_000136.2:c.1286A>T

Protein change:

Y429F

Molecular consequence:

NM_000136.3:c.1286A>T - missense variant - [Sequence Ontology: SO:0001583]
NM_001243743.2:c.1286A>T - missense variant - [Sequence Ontology: SO:0001583]
NM_001243744.2:c.1286A>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:: Hereditary cancer-predisposing syndrome
Synonyms:: Neoplastic Syndromes, Hereditary; Tumor predisposition; Cancer predisposition; See all synonyms [MedGen]
Identifiers:: MONDO: MONDO:0015356; MeSH: D009386; MedGen: C0027672

Recent activity

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Nucleotide
Gm31618 predicted gene, 31618 [Mus musculus]
Gm31618 predicted gene, 31618 [Mus musculus]
Gene ID:102633904

Gene
Gm31618 AND (alive[prop]) (1)
Gene

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV002688979	Ambry Genetics	criteria provided, single submitter (Ambry Variant Classification Scheme 2023)	Uncertain significance (Sep 20, 2022)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV002688979

Ambry Genetics

criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)

Uncertain significance
(Sep 20, 2022)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Ambry Genetics, SCV002688979.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

The p.Y429F variant (also known as c.1286A>T), located in coding exon 12 of the FANCC gene, results from an A to T substitution at nucleotide position 1286. The tyrosine at codon 429 is replaced by phenylalanine, an amino acid with highly similar properties. This amino acid position is conserved. In addition, this alteration is predicted to be tolerated by in silico analysis. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: May 1, 2024

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