NM_000384.3(APOB):c.12889C>T (p.Arg4297Cys) AND Cardiovascular phenotype

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Jun 12, 2022
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV002379695.4

Allele description [Variation Report for NM_000384.3(APOB):c.12889C>T (p.Arg4297Cys)]

NM_000384.3(APOB):c.12889C>T (p.Arg4297Cys)

Gene:

APOB:apolipoprotein B [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

2p24.1

Genomic location:

Preferred name:

NM_000384.3(APOB):c.12889C>T (p.Arg4297Cys)

HGVS:

NC_000002.12:g.21002533G>A
NG_011793.1:g.46541C>T
NM_000384.3:c.12889C>TMANE SELECT
NP_000375.3:p.Arg4297Cys
NC_000002.11:g.21225405G>A
NC_000002.11:g.21225405G>A
NM_000384.2:c.12889C>T

Protein change:

R4297C

Links:

dbSNP: rs761260344

NCBI 1000 Genomes Browser:

rs761260344

Molecular consequence:

NM_000384.3:c.12889C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:: Cardiovascular phenotype
Identifiers:: MedGen: CN230736

Recent activity

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CCR4-NOT transcription complex subunit 4 isoform e [Callithrix jacchus]
CCR4-NOT transcription complex subunit 4 isoform e [Callithrix jacchus]
gi|532514972|gb|JAB47893.1||gnl|TSA |SAMPLE2_17946_1

Protein
Lerista 12S ribosomal RNA gene, partial sequence; mitochondrial.
Lerista 12S ribosomal RNA gene, partial sequence; mitochondrial.
PopSet: 157312349

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV002690166	Ambry Genetics	criteria provided, single submitter (Ambry Variant Classification Scheme 2023)	Uncertain significance (Jun 12, 2022)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV002690166

Ambry Genetics

criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)

Uncertain significance
(Jun 12, 2022)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Ambry Genetics, SCV002690166.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

The p.R4297C variant (also known as c.12889C>T), located in coding exon 29 of the APOB gene, results from a C to T substitution at nucleotide position 12889. The arginine at codon 4297 is replaced by cysteine, an amino acid with highly dissimilar properties. This amino acid position is conserved. In addition, this alteration is predicted to be tolerated by in silico analysis. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Oct 26, 2024

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