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NM_000249.4(MLH1):c.91G>T (p.Ala31Ser) AND Hereditary cancer-predisposing syndrome

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Mar 13, 2019
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002375041.2

Allele description [Variation Report for NM_000249.4(MLH1):c.91G>T (p.Ala31Ser)]

NM_000249.4(MLH1):c.91G>T (p.Ala31Ser)

Gene:
MLH1:mutL homolog 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
3p22.2
Genomic location:
Preferred name:
NM_000249.4(MLH1):c.91G>T (p.Ala31Ser)
HGVS:
  • NC_000003.12:g.36993638G>T
  • NG_007109.2:g.5289G>T
  • NG_008418.1:g.4667C>A
  • NM_000249.4:c.91G>TMANE SELECT
  • NM_001167617.3:c.-426G>T
  • NM_001167618.3:c.-855G>T
  • NM_001167619.3:c.-768G>T
  • NM_001258271.2:c.91G>T
  • NM_001258273.2:c.-542G>T
  • NM_001258274.3:c.-1005G>T
  • NM_001354615.2:c.-536G>T
  • NM_001354616.2:c.-536G>T
  • NM_001354617.2:c.-628G>T
  • NM_001354618.2:c.-860G>T
  • NM_001354619.2:c.-984G>T
  • NM_001354620.2:c.-194G>T
  • NM_001354621.2:c.-953G>T
  • NM_001354622.2:c.-1066G>T
  • NM_001354623.2:c.-975G>T
  • NM_001354624.2:c.-736G>T
  • NM_001354625.2:c.-634G>T
  • NM_001354626.2:c.-731G>T
  • NM_001354627.2:c.-963G>T
  • NM_001354628.2:c.91G>T
  • NM_001354629.2:c.91G>T
  • NM_001354630.2:c.91G>T
  • NP_000240.1:p.Ala31Ser
  • NP_001245200.1:p.Ala31Ser
  • NP_001341557.1:p.Ala31Ser
  • NP_001341558.1:p.Ala31Ser
  • NP_001341559.1:p.Ala31Ser
  • LRG_216t1:c.91G>T
  • LRG_216:g.5289G>T
  • NC_000003.11:g.37035129G>T
  • NM_000249.3:c.91G>T
Protein change:
A31S
Links:
dbSNP: rs749671520
NCBI 1000 Genomes Browser:
rs749671520
Molecular consequence:
  • NM_001167617.3:c.-426G>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001167618.3:c.-855G>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001167619.3:c.-768G>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001258273.2:c.-542G>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001258274.3:c.-1005G>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001354615.2:c.-536G>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001354616.2:c.-536G>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001354617.2:c.-628G>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001354618.2:c.-860G>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001354619.2:c.-984G>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001354620.2:c.-194G>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001354621.2:c.-953G>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001354622.2:c.-1066G>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001354623.2:c.-975G>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001354624.2:c.-736G>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001354625.2:c.-634G>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001354626.2:c.-731G>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001354627.2:c.-963G>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_000249.4:c.91G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001258271.2:c.91G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354628.2:c.91G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354629.2:c.91G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354630.2:c.91G>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Hereditary cancer-predisposing syndrome
Synonyms:
Neoplastic Syndromes, Hereditary; Tumor predisposition; Cancer predisposition; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0015356; MeSH: D009386; MedGen: C0027672

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV002687091Ambry Genetics
criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)		Uncertain significance
(Mar 13, 2019) 		germlineclinical testing

Citation Link

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Ambry Genetics, SCV002687091.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The p.A31S variant (also known as c.91G>T), located in coding exon 1 of the MLH1 gene, results from a G to T substitution at nucleotide position 91. The alanine at codon 31 is replaced by serine, an amino acid with similar properties. This amino acid position is highly conserved in available vertebrate species. In addition, this alteration is predicted to be deleterious by in silico analysis. In addition, this alteration is predicted to be deleterious by MAPP-MMR in silico analyses (Chao EC et al. Hum. Mutat. 2008 Jun;29:852-60). Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024