NM_007375.4(TARDBP):c.121C>T (p.Leu41Phe) AND Inborn genetic diseases

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Dec 8, 2020
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV002368776.2

Allele description [Variation Report for NM_007375.4(TARDBP):c.121C>T (p.Leu41Phe)]

NM_007375.4(TARDBP):c.121C>T (p.Leu41Phe)

Gene:

TARDBP:TAR DNA binding protein [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

1p36.22

Genomic location:

Preferred name:

NM_007375.4(TARDBP):c.121C>T (p.Leu41Phe)

HGVS:

NC_000001.11:g.11013848C>T
NG_008734.1:g.6227C>T
NM_007375.4:c.121C>TMANE SELECT
NP_031401.1:p.Leu41Phe
NP_031401.1:p.Leu41Phe
LRG_659t1:c.121C>T
LRG_659:g.6227C>T
LRG_659p1:p.Leu41Phe
NC_000001.10:g.11073905C>T
NM_007375.3:c.121C>T

Protein change:

L41F

Molecular consequence:

NM_007375.4:c.121C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:: Inborn genetic diseases
Identifiers:: MeSH: D030342; MedGen: C0950123

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Gm33115 predicted gene, 33115 [Mus musculus]
Gm33115 predicted gene, 33115 [Mus musculus]
Gene ID:102635895

Gene
Gm33115 AND (alive[prop]) (1)
Gene
Desmoncus mitis ribosomal protein S16 (rps16) gene, intron, exon 2 and partial c...
Desmoncus mitis ribosomal protein S16 (rps16) gene, intron, exon 2 and partial cds; chloroplast
gi|330871911|gb|HQ265704.1|

Nucleotide

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV002660970	Ambry Genetics	criteria provided, single submitter (Ambry Variant Classification Scheme 2023)	Uncertain significance (Dec 8, 2020)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV002660970

Ambry Genetics

criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)

Uncertain significance
(Dec 8, 2020)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Ambry Genetics, SCV002660970.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

The p.L41F variant (also known as c.121C>T), located in coding exon 1 of the TARDBP gene, results from a C to T substitution at nucleotide position 121. The leucine at codon 41 is replaced by phenylalanine, an amino acid with highly similar properties. This amino acid position is highly conserved in available vertebrate species. In addition, this alteration is predicted to be deleterious by in silico analysis. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: May 1, 2024

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