NM_001458.5(FLNC):c.6199C>T (p.Arg2067Cys) AND Cardiovascular phenotype

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Jul 22, 2021
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV002367744.2

Allele description [Variation Report for NM_001458.5(FLNC):c.6199C>T (p.Arg2067Cys)]

NM_001458.5(FLNC):c.6199C>T (p.Arg2067Cys)

Genes:

FLNC-AS1:FLNC antisense RNA 1 [Gene - HGNC]
FLNC:filamin C [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

7q32.1

Genomic location:

Preferred name:

NM_001458.5(FLNC):c.6199C>T (p.Arg2067Cys)

HGVS:

NC_000007.14:g.128853022C>T
NG_011807.1:g.27594C>T
NM_001127487.2:c.6100C>T
NM_001458.5:c.6199C>TMANE SELECT
NP_001120959.1:p.Arg2034Cys
NP_001449.3:p.Arg2067Cys
NP_001449.3:p.Arg2067Cys
LRG_870t1:c.6199C>T
LRG_870:g.27594C>T
LRG_870p1:p.Arg2067Cys
NC_000007.13:g.128493076C>T
NM_001458.4:c.6199C>T

Protein change:

R2034C

Links:

dbSNP: rs754160175

NCBI 1000 Genomes Browser:

rs754160175

Molecular consequence:

NM_001127487.2:c.6100C>T - missense variant - [Sequence Ontology: SO:0001583]
NM_001458.5:c.6199C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:: Cardiovascular phenotype
Identifiers:: MedGen: CN230736

Recent activity

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Homo sapiens distal-less homeobox 4 (DLX4), transcript variant 1, mRNA
Homo sapiens distal-less homeobox 4 (DLX4), transcript variant 1, mRNA
gi|1519242084|ref|NM_138281.3|

Nucleotide
sponge metagenome
sponge metagenome
sponge metagenome Genome sequencing and assembly

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV002657378	Ambry Genetics	criteria provided, single submitter (Ambry Variant Classification Scheme 2023)	Uncertain significance (Jul 22, 2021)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV002657378

Ambry Genetics

criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)

Uncertain significance
(Jul 22, 2021)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Ambry Genetics, SCV002657378.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

The p.R2067C variant (also known as c.6199C>T), located in coding exon 37 of the FLNC gene, results from a C to T substitution at nucleotide position 6199. The arginine at codon 2067 is replaced by cysteine, an amino acid with highly dissimilar properties. This amino acid position is conserved. In addition, this alteration is predicted to be deleterious by in silico analysis. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 29, 2024

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