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NM_000238.4(KCNH2):c.1209C>T (p.Tyr403=) AND Cardiovascular phenotype

Germline classification:
Likely benign (1 submission)
Last evaluated:
Sep 21, 2021
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002359631.2

Allele description [Variation Report for NM_000238.4(KCNH2):c.1209C>T (p.Tyr403=)]

NM_000238.4(KCNH2):c.1209C>T (p.Tyr403=)

Gene:
KCNH2:potassium voltage-gated channel subfamily H member 2 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
7q36.1
Genomic location:
Preferred name:
NM_000238.4(KCNH2):c.1209C>T (p.Tyr403=)
HGVS:
  • NC_000007.14:g.150952773G>A
  • NG_008916.1:g.30154C>T
  • NM_000238.4:c.1209C>TMANE SELECT
  • NM_001204798.2:c.189C>T
  • NM_001406753.1:c.921C>T
  • NM_001406755.1:c.1032C>T
  • NM_001406756.1:c.921C>T
  • NM_001406757.1:c.909C>T
  • NM_172056.3:c.1209C>T
  • NM_172057.3:c.189C>T
  • NP_000229.1:p.Tyr403=
  • NP_000229.1:p.Tyr403=
  • NP_001191727.1:p.Tyr63=
  • NP_001393682.1:p.Tyr307=
  • NP_001393684.1:p.Tyr344=
  • NP_001393685.1:p.Tyr307=
  • NP_001393686.1:p.Tyr303=
  • NP_742053.1:p.Tyr403=
  • NP_742053.1:p.Tyr403=
  • NP_742054.1:p.Tyr63=
  • NP_742054.1:p.Tyr63=
  • LRG_288t1:c.1209C>T
  • LRG_288t2:c.1209C>T
  • LRG_288t3:c.189C>T
  • LRG_288:g.30154C>T
  • LRG_288p1:p.Tyr403=
  • LRG_288p2:p.Tyr403=
  • LRG_288p3:p.Tyr63=
  • NC_000007.13:g.150649861G>A
  • NM_000238.3:c.1209C>T
  • NM_172056.2:c.1209C>T
  • NM_172057.2:c.189C>T
  • NR_176254.1:n.1617C>T
  • NR_176255.1:n.490C>T
Molecular consequence:
  • NR_176254.1:n.1617C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_176255.1:n.490C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NM_000238.4:c.1209C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001204798.2:c.189C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001406753.1:c.921C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001406755.1:c.1032C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001406756.1:c.921C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001406757.1:c.909C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_172056.3:c.1209C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_172057.3:c.189C>T - synonymous variant - [Sequence Ontology: SO:0001819]

Condition(s)

Name:
Cardiovascular phenotype
Identifiers:
MedGen: CN230736

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Assertion and evidence details

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Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV002651315Ambry Genetics
criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)		Likely benign
(Sep 21, 2021) 		germlineclinical testing

Citation Link

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Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Ambry Genetics, SCV002651315.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

This alteration is classified as likely benign based on a combination of the following: seen in unaffected individuals, population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: May 1, 2024