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NM_030662.4(MAP2K2):c.1162C>T (p.Arg388Trp) AND Cardiovascular phenotype

Germline classification:
Benign (1 submission)
Last evaluated:
May 21, 2021
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002354182.2

Allele description [Variation Report for NM_030662.4(MAP2K2):c.1162C>T (p.Arg388Trp)]

NM_030662.4(MAP2K2):c.1162C>T (p.Arg388Trp)

Gene:
MAP2K2:mitogen-activated protein kinase kinase 2 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
19p13.3
Genomic location:
Preferred name:
NM_030662.4(MAP2K2):c.1162C>T (p.Arg388Trp)
Other names:
NM_030662.3(MAP2K2):c.1162C>T
HGVS:
  • NC_000019.10:g.4090639G>A
  • NG_007996.1:g.38490C>T
  • NM_030662.4:c.1162C>TMANE SELECT
  • NP_109587.1:p.Arg388Trp
  • NP_109587.1:p.Arg388Trp
  • LRG_750t1:c.1162C>T
  • LRG_750:g.38490C>T
  • LRG_750p1:p.Arg388Trp
  • NC_000019.9:g.4090637G>A
  • NM_030662.3:c.1162C>T
Protein change:
R388W
Links:
dbSNP: rs144383241
NCBI 1000 Genomes Browser:
rs144383241
Molecular consequence:
  • NM_030662.4:c.1162C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Cardiovascular phenotype
Identifiers:
MedGen: CN230736

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Assertion and evidence details

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Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV002619752Ambry Genetics
criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)		Benign
(May 21, 2021) 		germlineclinical testing

Citation Link

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Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Ambry Genetics, SCV002619752.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

This alteration is classified as benign based on a combination of the following: seen in unaffected individuals, population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024