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NM_004415.4(DSP):c.3799C>T (p.Arg1267Ter) AND Cardiovascular phenotype

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Oct 23, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002354165.2

Allele description [Variation Report for NM_004415.4(DSP):c.3799C>T (p.Arg1267Ter)]

NM_004415.4(DSP):c.3799C>T (p.Arg1267Ter)

Gene:
DSP:desmoplakin [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
6p24.3
Genomic location:
Preferred name:
NM_004415.4(DSP):c.3799C>T (p.Arg1267Ter)
HGVS:
  • NC_000006.12:g.7579989C>T
  • NG_008803.1:g.43353C>T
  • NM_001008844.3:c.3582+217C>T
  • NM_001319034.2:c.3799C>T
  • NM_004415.4:c.3799C>TMANE SELECT
  • NP_001305963.1:p.Arg1267Ter
  • NP_004406.2:p.Arg1267Ter
  • LRG_423t1:c.3799C>T
  • LRG_423:g.43353C>T
  • LRG_423p1:p.Arg1267Ter
  • NC_000006.11:g.7580222C>T
  • NM_004415.2:c.3799C>T
Protein change:
R1267*; ARG1267TER
Links:
OMIM: 125647.0010; dbSNP: rs121912997
NCBI 1000 Genomes Browser:
rs121912997
Molecular consequence:
  • NM_001008844.3:c.3582+217C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001319034.2:c.3799C>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_004415.4:c.3799C>T - nonsense - [Sequence Ontology: SO:0001587]

Condition(s)

Name:
Cardiovascular phenotype
Identifiers:
MedGen: CN230736

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV002620131Ambry Genetics
criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)
Pathogenic
(Oct 23, 2023)
germlineclinical testing

PubMed (3)
[See all records that cite these PMIDs]

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Loss of desmoplakin isoform I causes early onset cardiomyopathy and heart failure in a Naxos-like syndrome.

Uzumcu A, Norgett EE, Dindar A, Uyguner O, Nisli K, Kayserili H, Sahin SE, Dupont E, Severs NJ, Leigh IM, Yuksel-Apak M, Kelsell DP, Wollnik B.

J Med Genet. 2006 Feb;43(2):e5.

PubMed [citation]
PMID:
16467215
PMCID:
PMC2564645

Autosomal recessive transmission of familial nonsyndromic dilated cardiomyopathy due to compound desmoplakin gene mutations.

Surmacz R, Franaszczyk M, Pyda M, Płoski R, Bilińska ZT, Bobkowski W.

Pol Arch Intern Med. 2018 Dec 21;128(12):785-787. doi: 10.20452/pamw.4365. Epub 2018 Nov 6. No abstract available.

PubMed [citation]
PMID:
30398466
See all PubMed Citations (3)

Details of each submission

From Ambry Genetics, SCV002620131.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (3)

Description

The p.R1267* pathogenic mutation (also known as c.3799C>T), located in coding exon 23 of the DSP gene, results from a C to T substitution at nucleotide position 3799. This changes the amino acid from an arginine to a stop codon within coding exon 23. Alterations in DSP that result in haploinsufficiency or protein truncation have been reported in patients with arrhythmogenic right ventricular cardiomyopathy (ARVC) and dilated cardiomyopathy (DCM) (Fressart V et al. Europace. 2010;12(6):861-8; Elliott P et al. Circ Cardiovasc Genet. 2010;3(4):314-22; Quarta G et al. Circulation. 2011;123(23):2701-9; Garcia-Pavia P et al. Heart. 2011;97(21):1744-52; Rasmussen TB et al. Clin Genet. 2013;84(1):20-30; Pugh TJ et al. Genet Med. 2014;16(8):601-8). This particular variant has been reported in the homozygous state in a subject with left and right ventricular involvement, wooly hair and palmar keratoderma (Uzumcu A et al. J. Med. Genet., 2006 Feb;43:e5). This variant has also been reported in the compound heterozygous state in two siblings with dilated cardiomyopathy (DCM) (Surmacz R et al. Pol. Arch. Intern. Med., 2018 12;128:785-787). This variant is considered to be rare based on population cohorts in the Genome Aggregation Database (gnomAD). In addition to the clinical data presented in the literature, this alteration is expected to result in loss of function by premature protein truncation or nonsense-mediated mRNA decay. Based on the supporting evidence, this alteration is interpreted as a disease-causing mutation.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024