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NM_004415.4(DSP):c.5745dup (p.Lys1916Ter) AND Cardiovascular phenotype

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Oct 28, 2019
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002348273.2

Allele description [Variation Report for NM_004415.4(DSP):c.5745dup (p.Lys1916Ter)]

NM_004415.4(DSP):c.5745dup (p.Lys1916Ter)

Gene:
DSP:desmoplakin [Gene - OMIM - HGNC]
Variant type:
Duplication
Cytogenetic location:
6p24.3
Genomic location:
Preferred name:
NM_004415.4(DSP):c.5745dup (p.Lys1916Ter)
HGVS:
  • NC_000006.12:g.7583007dup
  • NG_008803.1:g.46371dup
  • NM_001008844.3:c.3948dup
  • NM_001319034.2:c.4416dup
  • NM_004415.4:c.5745dupMANE SELECT
  • NP_001008844.1:p.Lys1317Ter
  • NP_001305963.1:p.Lys1473Ter
  • NP_004406.2:p.Lys1916Ter
  • LRG_423t1:c.5745dup
  • LRG_423:g.46371dup
  • NC_000006.11:g.7583239_7583240insT
  • NC_000006.11:g.7583240dup
  • NM_004415.2:c.5745dupT
Protein change:
K1317*
Links:
dbSNP: rs1060500607
NCBI 1000 Genomes Browser:
rs1060500607
Molecular consequence:
  • NM_001008844.3:c.3948dup - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001319034.2:c.4416dup - nonsense - [Sequence Ontology: SO:0001587]
  • NM_004415.4:c.5745dup - nonsense - [Sequence Ontology: SO:0001587]

Condition(s)

Name:
Cardiovascular phenotype
Identifiers:
MedGen: CN230736

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV002651633Ambry Genetics
criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)
Pathogenic
(Oct 28, 2019)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Ambry Genetics, SCV002651633.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The c.5745dupT pathogenic mutation, located in coding exon 24 of the DSP gene, results from a duplication of T at nucleotide position 5745. This changes the amino acid at position 1916 from a lysine to a stop codon (p.K1916*). Alterations in DSP that result in haploinsufficiency or protein truncation have been reported in patients with arrhythmogenic right ventricular cardiomyopathy (ARVC) and dilated cardiomyopathy (DCM) (Fressart V et al. Europace. 2010;12(6):861-8; Elliott P et al. Circ Cardiovasc Genet. 2010;3(4):314-22; Quarta G et al. Circulation. 2011;123(23):2701-9; Garcia-Pavia P et al. Heart. 2011;97(21):1744-52; Rasmussen TB et al. Clin Genet. 2013;84(1):20-30; Pugh TJ et al. Genet Med. 2014;16(8):601-8). This alteration occurs at the 3' terminus of DSP and is not expected to trigger nonsense-mediated mRNA decay; however, it results in the removal of 956 amino acids comprising approximately 33% of the protein. While the exact functional impact of these removed amino acids is unknown, the eliminated regions include the plakin repeats, plectin domains, tandem repeats of G-S-R-[SR], and domains required for keratin and intermediate filament interaction. In addition, several alterations more C-terminal than this variant have been detected in ARVC and DCM cohorts (e.g., c.8077_8080delAAG and c.8188delC in Walsh R et al. Genet. Med. 2017;19:192-203). Based on the supporting evidence, this alteration is interpreted as a disease-causing mutation.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024