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NM_020631.6(PLEKHG5):c.560C>T (p.Ala187Val) AND Inborn genetic diseases

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Dec 22, 2020
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002344947.2

Allele description [Variation Report for NM_020631.6(PLEKHG5):c.560C>T (p.Ala187Val)]

NM_020631.6(PLEKHG5):c.560C>T (p.Ala187Val)

Gene:
PLEKHG5:pleckstrin homology and RhoGEF domain containing G5 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
1p36.31
Genomic location:
Preferred name:
NM_020631.6(PLEKHG5):c.560C>T (p.Ala187Val)
HGVS:
  • NC_000001.11:g.6474044G>A
  • NG_007978.1:g.50966C>T
  • NM_001042663.3:c.671C>T
  • NM_001042664.2:c.560C>T
  • NM_001042665.2:c.560C>T
  • NM_001265592.2:c.671C>T
  • NM_001265593.2:c.767C>T
  • NM_001265594.3:c.560C>T
  • NM_020631.6:c.560C>TMANE SELECT
  • NM_198681.4:c.560C>T
  • NP_001036128.2:p.Ala224Val
  • NP_001036129.1:p.Ala187Val
  • NP_001036129.1:p.Ala187Val
  • NP_001036130.1:p.Ala187Val
  • NP_001036130.1:p.Ala187Val
  • NP_001252521.2:p.Ala224Val
  • NP_001252522.1:p.Ala256Val
  • NP_001252522.1:p.Ala256Val
  • NP_001252523.1:p.Ala187Val
  • NP_001252523.1:p.Ala187Val
  • NP_065682.2:p.Ala187Val
  • NP_065682.2:p.Ala187Val
  • NP_941374.3:p.Ala187Val
  • LRG_262t1:c.560C>T
  • LRG_262:g.50966C>T
  • LRG_262p1:p.Ala187Val
  • NC_000001.10:g.6534104G>A
  • NM_001042664.1:c.560C>T
  • NM_001042665.1:c.560C>T
  • NM_001265593.1:c.767C>T
  • NM_001265594.2:c.560C>T
  • NM_020631.3:c.560C>T
Protein change:
A187V
Molecular consequence:
  • NM_001042663.3:c.671C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001042664.2:c.560C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001042665.2:c.560C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001265592.2:c.671C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001265593.2:c.767C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001265594.3:c.560C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_020631.6:c.560C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_198681.4:c.560C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Inborn genetic diseases
Identifiers:
MeSH: D030342; MedGen: C0950123

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV002651440Ambry Genetics
criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)
Uncertain significance
(Dec 22, 2020)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Ambry Genetics, SCV002651440.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The p.A187V variant (also known as c.560C>T), located in coding exon 6 of the PLEKHG5 gene, results from a C to T substitution at nucleotide position 560. The alanine at codon 187 is replaced by valine, an amino acid with similar properties. This amino acid position is poorly conserved in available vertebrate species. In addition, this alteration is predicted to be tolerated by in silico analysis. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: May 1, 2024