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NM_000399.5(EGR2):c.1205A>G (p.Tyr402Cys) AND Inborn genetic diseases

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Nov 12, 2020
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002344900.2

Allele description [Variation Report for NM_000399.5(EGR2):c.1205A>G (p.Tyr402Cys)]

NM_000399.5(EGR2):c.1205A>G (p.Tyr402Cys)

Gene:
EGR2:early growth response 2 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
10q21.3
Genomic location:
Preferred name:
NM_000399.5(EGR2):c.1205A>G (p.Tyr402Cys)
HGVS:
  • NC_000010.11:g.62813433T>C
  • NG_008936.2:g.111468A>G
  • NM_000399.5:c.1205A>GMANE SELECT
  • NM_001136177.3:c.1205A>G
  • NM_001136178.2:c.1205A>G
  • NM_001136179.3:c.1055A>G
  • NM_001321037.2:c.1055A>G
  • NM_001410931.1:c.1244A>G
  • NP_000390.2:p.Tyr402Cys
  • NP_000390.2:p.Tyr402Cys
  • NP_001129649.1:p.Tyr402Cys
  • NP_001129650.1:p.Tyr402Cys
  • NP_001129651.1:p.Tyr352Cys
  • NP_001307966.1:p.Tyr352Cys
  • NP_001397860.1:p.Tyr415Cys
  • LRG_239t1:c.1205A>G
  • LRG_239:g.111468A>G
  • LRG_239p1:p.Tyr402Cys
  • NC_000010.10:g.64573193T>C
  • NM_000399.3:c.1205A>G
Protein change:
Y352C
Molecular consequence:
  • NM_000399.5:c.1205A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001136177.3:c.1205A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001136178.2:c.1205A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001136179.3:c.1055A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001321037.2:c.1055A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001410931.1:c.1244A>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Inborn genetic diseases
Identifiers:
MeSH: D030342; MedGen: C0950123

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Assertion and evidence details

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Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV002648873Ambry Genetics
criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)		Uncertain significance
(Nov 12, 2020) 		germlineclinical testing

Citation Link

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Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Ambry Genetics, SCV002648873.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The p.Y402C variant (also known as c.1205A>G), located in coding exon 2 of the EGR2 gene, results from an A to G substitution at nucleotide position 1205. The tyrosine at codon 402 is replaced by cysteine, an amino acid with highly dissimilar properties. This amino acid position is not well conserved in available vertebrate species. In addition, this alteration is predicted to be tolerated by in silico analysis. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: May 1, 2024