NM_006514.4(SCN10A):c.3109G>A (p.Glu1037Lys) AND Cardiovascular phenotype

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Oct 29, 2021
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV002326058.2

Allele description [Variation Report for NM_006514.4(SCN10A):c.3109G>A (p.Glu1037Lys)]

NM_006514.4(SCN10A):c.3109G>A (p.Glu1037Lys)

Genes:

LOC110121288:VISTA enhancer hs2268 [Gene]
SCN10A:sodium voltage-gated channel alpha subunit 10 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

3p22.2

Genomic location:

Preferred name:

NM_006514.4(SCN10A):c.3109G>A (p.Glu1037Lys)

HGVS:

NC_000003.12:g.38725293C>T
NG_031891.3:g.95924G>A
NG_053903.1:g.3258C>T
NM_001293306.2:c.3106G>A
NM_001293307.2:c.2815G>A
NM_006514.4:c.3109G>AMANE SELECT
NP_001280235.2:p.Glu1036Lys
NP_001280236.2:p.Glu939Lys
NP_006505.4:p.Glu1037Lys
NC_000003.11:g.38766784C>T
NG_031891.2:g.73718G>A
NM_006514.2:c.3109G>A

Protein change:

E1036K

Molecular consequence:

NM_001293306.2:c.3106G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001293307.2:c.2815G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_006514.4:c.3109G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:: Cardiovascular phenotype
Identifiers:: MedGen: CN230736

Recent activity

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Paenibacillus sp. G_R32 16S ribosomal RNA gene, partial sequence
Paenibacillus sp. G_R32 16S ribosomal RNA gene, partial sequence
gi|157093760|gb|EU122053.1|

Nucleotide

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV002607828	Ambry Genetics	criteria provided, single submitter (Ambry Variant Classification Scheme 2023)	Uncertain significance (Oct 29, 2021)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV002607828

Ambry Genetics

criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)

Uncertain significance
(Oct 29, 2021)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Ambry Genetics, SCV002607828.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

The p.E1037K variant (also known as c.3109G>A), located in coding exon 17 of the SCN10A gene, results from a G to A substitution at nucleotide position 3109. The glutamic acid at codon 1037 is replaced by lysine, an amino acid with similar properties. This amino acid position is conserved. In addition, this alteration is predicted to be tolerated by in silico analysis. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: May 1, 2024

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