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NM_000546.6(TP53):c.-3G>A AND Hereditary cancer-predisposing syndrome

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Jan 14, 2020
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002325712.2

Allele description [Variation Report for NM_000546.6(TP53):c.-3G>A]

NM_000546.6(TP53):c.-3G>A

Gene:
TP53:tumor protein p53 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
17p13.1
Genomic location:
Preferred name:
NM_000546.6(TP53):c.-3G>A
HGVS:
  • NC_000017.11:g.7676597C>T
  • NG_017013.2:g.15954G>A
  • NM_000546.6:c.-3G>AMANE SELECT
  • NM_001126112.3:c.-3G>A
  • NM_001126113.3:c.-3G>A
  • NM_001126114.3:c.-3G>A
  • NM_001126118.2:c.-237G>A
  • NM_001276695.3:c.-120G>A
  • NM_001276696.3:c.-120G>A
  • NM_001276760.3:c.-120G>A
  • NM_001276761.3:c.-120G>A
  • LRG_321t1:c.-3G>A
  • LRG_321:g.15954G>A
  • NC_000017.10:g.7579915C>T
  • NM_000546.4:c.-3G>A
  • NM_000546.5:c.-3G>A
Links:
dbSNP: rs2073524866
NCBI 1000 Genomes Browser:
rs2073524866
Molecular consequence:
  • NM_000546.6:c.-3G>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001126112.3:c.-3G>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001126113.3:c.-3G>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001126114.3:c.-3G>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001126118.2:c.-237G>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001276695.3:c.-120G>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001276696.3:c.-120G>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001276760.3:c.-120G>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001276761.3:c.-120G>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]

Condition(s)

Name:
Hereditary cancer-predisposing syndrome
Synonyms:
Neoplastic Syndromes, Hereditary; Tumor predisposition; Cancer predisposition; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0015356; MeSH: D009386; MedGen: C0027672

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV002626213Ambry Genetics
criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)		Uncertain significance
(Jan 14, 2020) 		germlineclinical testing

Citation Link

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Ambry Genetics, SCV002626213.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The c.-3G>A variant is located in the 5' untranslated region (5’ UTR) of the TP53 gene. This variant results from a G to A substitution 3 bases upstream from the first translated codon. This nucleotide position is not well conserved in available vertebrate species. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: May 1, 2024