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NM_000335.5(SCN5A):c.4119C>A (p.Asn1373Lys) AND Cardiovascular phenotype

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Nov 1, 2019
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002323520.2

Allele description [Variation Report for NM_000335.5(SCN5A):c.4119C>A (p.Asn1373Lys)]

NM_000335.5(SCN5A):c.4119C>A (p.Asn1373Lys)

Gene:
SCN5A:sodium voltage-gated channel alpha subunit 5 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
3p22.2
Genomic location:
Preferred name:
NM_000335.5(SCN5A):c.4119C>A (p.Asn1373Lys)
HGVS:
  • NC_000003.12:g.38560270G>T
  • NG_008934.1:g.94403C>A
  • NM_000335.5:c.4119C>AMANE SELECT
  • NM_001099404.2:c.4122C>A
  • NM_001099405.2:c.4122C>A
  • NM_001160160.2:c.4119C>A
  • NM_001160161.2:c.3960C>A
  • NM_001354701.2:c.4119C>A
  • NM_198056.3:c.4122C>A
  • NP_000326.2:p.Asn1373Lys
  • NP_000326.2:p.Asn1373Lys
  • NP_001092874.1:p.Asn1374Lys
  • NP_001092874.1:p.Asn1374Lys
  • NP_001092875.1:p.Asn1374Lys
  • NP_001153632.1:p.Asn1373Lys
  • NP_001153633.1:p.Asn1320Lys
  • NP_001341630.1:p.Asn1373Lys
  • NP_932173.1:p.Asn1374Lys
  • NP_932173.1:p.Asn1374Lys
  • LRG_289t1:c.4122C>A
  • LRG_289t2:c.4119C>A
  • LRG_289t3:c.4122C>A
  • LRG_289:g.94403C>A
  • LRG_289p1:p.Asn1374Lys
  • LRG_289p2:p.Asn1373Lys
  • LRG_289p3:p.Asn1374Lys
  • NC_000003.11:g.38601761G>T
  • NM_000335.4:c.4119C>A
  • NM_001099404.1:c.4122C>A
  • NM_198056.2:c.4122C>A
  • NR_176299.1:n.4868C>A
Protein change:
N1320K
Molecular consequence:
  • NM_000335.5:c.4119C>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001099404.2:c.4122C>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001099405.2:c.4122C>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001160160.2:c.4119C>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001160161.2:c.3960C>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354701.2:c.4119C>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_198056.3:c.4122C>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Cardiovascular phenotype
Identifiers:
MedGen: CN230736

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Assertion and evidence details

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Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV002627153Ambry Genetics
criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)		Uncertain significance
(Nov 1, 2019) 		germlineclinical testing

Citation Link

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Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Ambry Genetics, SCV002627153.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The p.N1374K variant (also known as c.4122C>A), located in coding exon 22 of the SCN5A gene, results from a C to A substitution at nucleotide position 4122. The asparagine at codon 1374 is replaced by lysine, an amino acid with similar properties. This amino acid position is not well conserved in available vertebrate species. In addition, the in silico prediction for this alteration is inconclusive. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: May 1, 2024