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NM_006950.3(SYN1):c.1968G>A (p.Pro656=) AND Inborn genetic diseases

Germline classification:
Likely benign (1 submission)
Last evaluated:
Apr 13, 2017
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002317657.9

Allele description [Variation Report for NM_006950.3(SYN1):c.1968G>A (p.Pro656=)]

NM_006950.3(SYN1):c.1968G>A (p.Pro656=)

Gene:
SYN1:synapsin I [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
Xp11.3
Genomic location:
Preferred name:
NM_006950.3(SYN1):c.1968G>A (p.Pro656=)
Other names:
p.P656P:CCG>CCA
HGVS:
  • NC_000023.11:g.47574016C>T
  • NG_008437.1:g.50842G>A
  • NM_006950.3:c.1968G>AMANE SELECT
  • NM_133499.2:c.1968G>A
  • NP_008881.2:p.Pro656=
  • NP_598006.1:p.Pro656=
  • NC_000023.10:g.47433415C>T
Links:
dbSNP: rs199844514
NCBI 1000 Genomes Browser:
rs199844514
Molecular consequence:
  • NM_006950.3:c.1968G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_133499.2:c.1968G>A - synonymous variant - [Sequence Ontology: SO:0001819]

Condition(s)

Name:
Inborn genetic diseases
Identifiers:
MeSH: D030342; MedGen: C0950123

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Assertion and evidence details

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Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV000850600Ambry Genetics
criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)		Likely benign
(Apr 13, 2017) 		germlineclinical testing

Citation Link

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Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Ambry Genetics, SCV000850600.5

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

This alteration is classified as likely benign based on a combination of the following: seen in unaffected individuals, population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 10, 2024