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NM_000124.4(ERCC6):c.1719T>A (p.Cys573Ter) AND Cockayne syndrome type 2

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Feb 2, 2022
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002306781.2

Allele description [Variation Report for NM_000124.4(ERCC6):c.1719T>A (p.Cys573Ter)]

NM_000124.4(ERCC6):c.1719T>A (p.Cys573Ter)

Gene:
ERCC6:ERCC excision repair 6, chromatin remodeling factor [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
10q11.23
Genomic location:
Preferred name:
NM_000124.4(ERCC6):c.1719T>A (p.Cys573Ter)
HGVS:
  • NC_000010.11:g.49493219A>T
  • NG_009442.1:g.50883T>A
  • NM_000124.4:c.1719T>AMANE SELECT
  • NM_001346440.2:c.1719T>A
  • NP_000115.1:p.Cys573Ter
  • NP_000115.1:p.Cys573Ter
  • NP_001333369.1:p.Cys573Ter
  • LRG_465t1:c.1719T>A
  • LRG_465:g.50883T>A
  • LRG_465p1:p.Cys573Ter
  • NC_000010.10:g.50701265A>T
  • NM_000124.2:c.1719T>A
Protein change:
C573*
Molecular consequence:
  • NM_000124.4:c.1719T>A - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001346440.2:c.1719T>A - nonsense - [Sequence Ontology: SO:0001587]

Condition(s)

Name:
Cockayne syndrome type 2 (CSB)
Synonyms:
Cockayne syndrome B; Cockayne syndrome type 2; Cockayne Syndrome, Type II
Identifiers:
MONDO: MONDO:0019570; MedGen: C0751038; Orphanet: 191; OMIM: 133540

Recent activity

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  • alpha-2u globulin PGCL4 precursor [Rattus norvegicus]
    alpha-2u globulin PGCL4 precursor [Rattus norvegicus]
    gi|77695921|ref|NP_671748.2|
    Protein
  • CBR3 carbonyl reductase 3 [Sus scrofa]
    CBR3 carbonyl reductase 3 [Sus scrofa]
    Gene ID:100512990
    Gene
  • Choledochostomy
    Choledochostomy
    Surgical formation of an opening (stoma) into the COMMON BILE DUCT for drainage or for direct communication with a site in the small intestine, primarily the DUODENUM or JEJUN...<br/>Year introduced: 1988
    MeSH
  • Pyloromyotomy
    Pyloromyotomy
    Surgical incision of the PYLORUS used to treat pyloric stenoses (e.g. INFANTILE HYPERTROPHIC PYLORIC STENOSIS).<br/>Year introduced: 2018
    MeSH

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV002602812Myriad Genetics, Inc.
criteria provided, single submitter

(Myriad Women's Health Autosomal Recessive and X-Linked Classification Criteria (2021))		Likely pathogenic
(Feb 2, 2022) 		unknownclinical testing

Citation Link

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Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Myriad Genetics, Inc., SCV002602812.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

NM_000124.2(ERCC6):c.1719T>A(C573*) is expected to be pathogenic in the context of ERCC6-related disorders. This variant is predicted to lead to an abnormal or absent protein product due to the creation of a premature termination codon in ERCC6, a gene where loss-of-function variants are known to be pathogenic. Please note: this variant was assessed in the context of healthy population screening.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 8, 2024