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NM_000243.3(MEFV):c.2338C>A (p.Pro780Thr) AND not specified

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Sep 14, 2022
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002298469.1

Allele description [Variation Report for NM_000243.3(MEFV):c.2338C>A (p.Pro780Thr)]

NM_000243.3(MEFV):c.2338C>A (p.Pro780Thr)

Gene:
MEFV:MEFV innate immunity regulator, pyrin [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
16p13.3
Genomic location:
Preferred name:
NM_000243.3(MEFV):c.2338C>A (p.Pro780Thr)
HGVS:
  • NC_000016.10:g.3243149G>T
  • NG_007871.1:g.18479C>A
  • NM_000243.3:c.2338C>AMANE SELECT
  • NM_001198536.2:c.*542C>A
  • NP_000234.1:p.Pro780Thr
  • NP_000234.1:p.Pro780Thr
  • LRG_190t1:c.2338C>A
  • LRG_190:g.18479C>A
  • LRG_190p1:p.Pro780Thr
  • NC_000016.9:g.3293149G>T
  • NM_000243.1:c.2338C>A
  • NM_000243.2:c.2338C>A
  • O15553:p.Pro780Thr
Protein change:
P780T
Links:
UniProtKB: O15553#VAR_028353; dbSNP: rs104895154
NCBI 1000 Genomes Browser:
rs104895154
Molecular consequence:
  • NM_001198536.2:c.*542C>A - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_000243.3:c.2338C>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV002598584Women's Health and Genetics/Laboratory Corporation of America, LabCorp
criteria provided, single submitter

(LabCorp Variant Classification Summary - May 2015)
Uncertain significance
(Sep 14, 2022)
germlineclinical testing

PubMed (3)
[See all records that cite these PMIDs]

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

An unexpectedly high frequency of MEFV mutations in patients with anti-citrullinated protein antibody-negative palindromic rheumatism.

Cañete JD, Arostegui JI, Queiró R, Gratacós J, Hernández MV, Larrosa M, Alperí M, Moll C, Rius J, Sanmartí R, Yagüe J.

Arthritis Rheum. 2007 Aug;56(8):2784-8.

PubMed [citation]
PMID:
17665427

Clinical Review: Familial Mediterranean Fever-An Overview of Pathogenesis, Symptoms, Ocular Manifestations, and Treatment.

Petrushkin H, Stanford M, Fortune F, Jawad AS.

Ocul Immunol Inflamm. 2016 Aug;24(4):422-30. doi: 10.3109/09273948.2015.1010012. Epub 2015 Mar 11. Review.

PubMed [citation]
PMID:
25760918
See all PubMed Citations (3)

Details of each submission

From Women's Health and Genetics/Laboratory Corporation of America, LabCorp, SCV002598584.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (3)

Description

Variant summary: MEFV c.2338C>A (p.Pro780Thr) results in a non-conservative amino acid change in the encoded protein sequence. Three of five in-silico tools predict a benign effect of the variant on protein function. The variant allele was found at a frequency of 3.2e-05 in 251308 control chromosomes. The available data on variant occurrences in the general population are insufficient to allow any conclusion about variant significance. c.2338C>A has been reported in the literature in individuals affected with Familial Mediterranean Fever (example, Gouliemos_2006, Canete_2007). These report(s) do not provide unequivocal conclusions about association of the variant with Familial Mediterranean Fever. To our knowledge, no experimental evidence demonstrating an impact on protein function has been reported. Seven clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar after 2014 without evidence for independent evaluation. All laboratories classified the variant as uncertain significance. Based on the evidence outlined above, the variant was classified as uncertain significance.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024