NM_006516.4(SLC2A1):c.940G>A (p.Gly314Ser) AND Dystonia 9

Germline classification:: Pathogenic (1 submission)
Last evaluated:: Jul 19, 2022
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV002288509.9

Allele description [Variation Report for NM_006516.4(SLC2A1):c.940G>A (p.Gly314Ser)]

NM_006516.4(SLC2A1):c.940G>A (p.Gly314Ser)

Gene:

SLC2A1:solute carrier family 2 member 1 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

1p34.2

Genomic location:

Preferred name:

NM_006516.4(SLC2A1):c.940G>A (p.Gly314Ser)

HGVS:

NC_000001.11:g.42929242C>T
NG_008232.1:g.34935G>A
NM_006516.4:c.940G>AMANE SELECT
NP_006507.2:p.Gly314Ser
NP_006507.2:p.Gly314Ser
LRG_1132:g.34935G>A
NC_000001.10:g.43394913C>T
NM_006516.2:c.940G>A
P11166:p.Gly314Ser

Protein change:

G314S; GLY314SER

Links:

UniProtKB: P11166#VAR_054764; OMIM: 138140.0009; dbSNP: rs121909739

NCBI 1000 Genomes Browser:

rs121909739

Molecular consequence:

NM_006516.4:c.940G>A - missense variant - [Sequence Ontology: SO:0001583]

Observations:

Condition(s)

Name:: Dystonia 9 (DYT9)
Synonyms:: CHOREOATHETOSIS, KINESIGENIC, WITH EPISODIC ATAXIA AND SPASTICITY
Identifiers:: MONDO: MONDO:0010983; MedGen: C1832855; OMIM: 601042

Recent activity

Clear Turn Off Turn On

Chain B, Pyridoxal kinase
Chain B, Pyridoxal kinase
gi|218766953|pdb|3FHY|B

Protein
unnamed protein product [Mus musculus]
unnamed protein product [Mus musculus]
gi|12841054|dbj|BAB25058.1|

Protein

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

Help

Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV002581027	MGZ Medical Genetics Center	criteria provided, single submitter (ACMG Guidelines, 2015)	Pathogenic (Jul 19, 2022)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV002581027

MGZ Medical Genetics Center

criteria provided, single submitter

(ACMG Guidelines, 2015)

Pathogenic
(Jul 19, 2022)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	yes	1	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From MGZ Medical Genetics Center, SCV002581027.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	1	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		1	not provided	not provided	not provided

Last Updated: Nov 3, 2024

ClinVar

Relating variation to medicine