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NM_002834.5(PTPN11):c.155C>T (p.Thr52Ile) AND Noonan syndrome 1

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Sep 27, 2022
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002287349.3

Allele description [Variation Report for NM_002834.5(PTPN11):c.155C>T (p.Thr52Ile)]

NM_002834.5(PTPN11):c.155C>T (p.Thr52Ile)

Gene:
PTPN11:protein tyrosine phosphatase non-receptor type 11 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
12q24.13
Genomic location:
Preferred name:
NM_002834.5(PTPN11):c.155C>T (p.Thr52Ile)
Other names:
p.T52I:ACC>ATC; NM_002834.4(PTPN11):c.155C>T
HGVS:
  • NC_000012.12:g.112450335C>T
  • NG_007459.1:g.36604C>T
  • NM_001330437.2:c.155C>T
  • NM_001374625.1:c.152C>T
  • NM_002834.5:c.155C>TMANE SELECT
  • NM_080601.3:c.155C>T
  • NP_001317366.1:p.Thr52Ile
  • NP_001361554.1:p.Thr51Ile
  • NP_002825.3:p.Thr52Ile
  • NP_542168.1:p.Thr52Ile
  • LRG_614t1:c.155C>T
  • LRG_614:g.36604C>T
  • NC_000012.11:g.112888139C>T
  • NM_002834.3:c.155C>T
  • NM_002834.4:c.155C>T
  • NM_080601.1:c.155C>T
  • c.155C>T
Protein change:
T51I
Links:
dbSNP: rs397507503
NCBI 1000 Genomes Browser:
rs397507503
Molecular consequence:
  • NM_001330437.2:c.155C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001374625.1:c.152C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_002834.5:c.155C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_080601.3:c.155C>T - missense variant - [Sequence Ontology: SO:0001583]
Observations:
1

Condition(s)

Name:
Noonan syndrome 1 (NS1)
Synonyms:
Turner Syndrome, Male; Turner phenotype with normal karyotype; Female pseudo-Turner syndrome
Identifiers:
MONDO: MONDO:0008104; MedGen: C4551602; Orphanet: 648; OMIM: 163950

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV002578163Institute for Medical Genetics and Human Genetics, Charité - Universitätsmedizin Berlin

See additional submitters

criteria provided, single submitter

(ACMG Guidelines, 2015)
Likely pathogenic
(Sep 27, 2022)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyes1not providednot provided1not providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Institute for Medical Genetics and Human Genetics, Charité - Universitätsmedizin Berlin, SCV002578163.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyes1Bloodnot provided1not providednot providednot provided

Last Updated: Sep 29, 2024