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NM_004360.5(CDH1):c.2474C>T (p.Pro825Leu) AND Familial cancer of breast

Germline classification:
Uncertain significance (3 submissions)
Last evaluated:
Jan 22, 2024
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002286408.7

Allele description [Variation Report for NM_004360.5(CDH1):c.2474C>T (p.Pro825Leu)]

NM_004360.5(CDH1):c.2474C>T (p.Pro825Leu)

Gene:
CDH1:cadherin 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
16q22.1
Genomic location:
Preferred name:
NM_004360.5(CDH1):c.2474C>T (p.Pro825Leu)
HGVS:
  • NC_000016.10:g.68833324C>T
  • NG_008021.1:g.101033C>T
  • NM_001317184.2:c.2291C>T
  • NM_001317185.2:c.926C>T
  • NM_001317186.2:c.509C>T
  • NM_004360.5:c.2474C>TMANE SELECT
  • NP_001304113.1:p.Pro764Leu
  • NP_001304114.1:p.Pro309Leu
  • NP_001304115.1:p.Pro170Leu
  • NP_004351.1:p.Pro825Leu
  • LRG_301t1:c.2474C>T
  • LRG_301:g.101033C>T
  • NC_000016.9:g.68867227C>T
  • NM_004360.3:c.2474C>T
  • NM_004360.4:c.2474C>T
  • p.P825L
Protein change:
P170L
Links:
dbSNP: rs587781312
NCBI 1000 Genomes Browser:
rs587781312
Molecular consequence:
  • NM_001317184.2:c.2291C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001317185.2:c.926C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001317186.2:c.509C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_004360.5:c.2474C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Familial cancer of breast
Synonyms:
Breast cancer, familial; Hereditary breast cancer
Identifiers:
MONDO: MONDO:0016419; MedGen: C0346153; OMIM: 114480

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV002576428Institute of Human Genetics, University of Leipzig Medical Center
criteria provided, single submitter

(ACMG Guidelines, 2015)
Uncertain significance
(Aug 22, 2022)
unknownclinical testing

PubMed (1)
[See all records that cite this PMID]

SCV004101085Zotz-Klimas Genetics Lab, MVZ Zotz Klimas
no assertion criteria provided
Uncertain significance
(Nov 2, 2023)
germlineclinical testing

SCV004215620Baylor Genetics
criteria provided, single submitter

(ACMG Guidelines, 2015)
Uncertain significance
(Jan 22, 2024)
unknownclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing
not providedunknownyesnot providednot providednot providednot providednot providedclinical testing
not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Institute of Human Genetics, University of Leipzig Medical Center, SCV002576428.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)

Description

_x000D_ Criteria applied: PM2_SUP, PP3

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownyesnot providednot providednot providednot providednot providednot providednot provided

From Zotz-Klimas Genetics Lab, MVZ Zotz Klimas, SCV004101085.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From Baylor Genetics, SCV004215620.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024