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NM_000376.3(VDR):c.*222G>C AND not provided

Germline classification:
Likely benign (1 submission)
Last evaluated:
Feb 4, 2022
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002285443.2

Allele description [Variation Report for NM_000376.3(VDR):c.*222G>C]

NM_000376.3(VDR):c.*222G>C

Gene:
VDR:vitamin D receptor [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
12q13.11
Genomic location:
Preferred name:
NM_000376.3(VDR):c.*222G>C
HGVS:
  • NC_000012.12:g.47844524C>G
  • NG_008731.1:g.65508G>C
  • NM_000376.3:c.*222G>CMANE SELECT
  • NM_001017535.2:c.*222G>C
  • NM_001017536.2:c.*222G>C
  • NM_001364085.2:c.*21G>C
  • NM_001374661.1:c.*222G>C
  • NM_001374662.1:c.*222G>C
  • NC_000012.11:g.48238307C>G
  • NM_001017535.1:c.*222G>C
Links:
dbSNP: rs11574117
NCBI 1000 Genomes Browser:
rs11574117
Molecular consequence:
  • NM_000376.3:c.*222G>C - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_001017535.2:c.*222G>C - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_001017536.2:c.*222G>C - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_001364085.2:c.*21G>C - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_001374661.1:c.*222G>C - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_001374662.1:c.*222G>C - 3 prime UTR variant - [Sequence Ontology: SO:0001624]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

Recent activity

  • Mus musculus
    Mus musculus
    Gene expression profiling of control cohesin knockdown LSK cells
    BioProject

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV002575540GeneDx
criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)
Likely benign
(Feb 4, 2022)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV002575540.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

See Variant Classification Assertion Criteria.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Dec 24, 2023