NM_003242.6(TGFBR2):c.1266A>G (p.Ala422=) AND Ehlers-Danlos syndrome

Germline classification:: Benign (1 submission)
Last evaluated:: Aug 13, 2021
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV002277110.10

Allele description [Variation Report for NM_003242.6(TGFBR2):c.1266A>G (p.Ala422=)]

NM_003242.6(TGFBR2):c.1266A>G (p.Ala422=)

Gene:

TGFBR2:transforming growth factor beta receptor 2 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

3p24.1

Genomic location:

Preferred name:

NM_003242.6(TGFBR2):c.1266A>G (p.Ala422=)

Other names:

p.A422A:GCA>GCG

HGVS:

NC_000003.12:g.30674116A>G
NG_007490.1:g.72615A>G
NM_001024847.3:c.1341A>G
NM_001407126.1:c.1449A>G
NM_001407127.1:c.1374A>G
NM_001407128.1:c.1293A>G
NM_001407129.1:c.1269A>G
NM_001407130.1:c.1266A>G
NM_001407132.1:c.1161A>G
NM_001407133.1:c.1161A>G
NM_001407134.1:c.1161A>G
NM_001407135.1:c.1161A>G
NM_001407136.1:c.1161A>G
NM_001407137.1:c.981A>G
NM_001407138.1:c.906A>G
NM_001407139.1:c.530-14271A>G
NM_003242.6:c.1266A>GMANE SELECT
NP_001020018.1:p.Ala447=
NP_001020018.1:p.Ala447=
NP_001394055.1:p.Ala483=
NP_001394056.1:p.Ala458=
NP_001394057.1:p.Ala431=
NP_001394058.1:p.Ala423=
NP_001394059.1:p.Ala422=
NP_001394061.1:p.Ala387=
NP_001394062.1:p.Ala387=
NP_001394063.1:p.Ala387=
NP_001394064.1:p.Ala387=
NP_001394065.1:p.Ala387=
NP_001394066.1:p.Ala327=
NP_001394067.1:p.Ala302=
NP_003233.4:p.Ala422=
LRG_779t1:c.1341A>G
LRG_779t2:c.1266A>G
LRG_779:g.72615A>G
LRG_779p1:p.Ala447=
LRG_779p2:p.Ala422=
NC_000003.11:g.30715608A>G
NM_001024847.2:c.1341A>G
NM_003242.5:c.1266A>G
c.1266A>G

Links:

dbSNP: rs2228047

NCBI 1000 Genomes Browser:

rs2228047

Molecular consequence:

NM_001407139.1:c.530-14271A>G - intron variant - [Sequence Ontology: SO:0001627]
NM_001024847.3:c.1341A>G - synonymous variant - [Sequence Ontology: SO:0001819]
NM_001407126.1:c.1449A>G - synonymous variant - [Sequence Ontology: SO:0001819]
NM_001407127.1:c.1374A>G - synonymous variant - [Sequence Ontology: SO:0001819]
NM_001407128.1:c.1293A>G - synonymous variant - [Sequence Ontology: SO:0001819]
NM_001407129.1:c.1269A>G - synonymous variant - [Sequence Ontology: SO:0001819]
NM_001407130.1:c.1266A>G - synonymous variant - [Sequence Ontology: SO:0001819]
NM_001407132.1:c.1161A>G - synonymous variant - [Sequence Ontology: SO:0001819]
NM_001407133.1:c.1161A>G - synonymous variant - [Sequence Ontology: SO:0001819]
NM_001407134.1:c.1161A>G - synonymous variant - [Sequence Ontology: SO:0001819]
NM_001407135.1:c.1161A>G - synonymous variant - [Sequence Ontology: SO:0001819]
NM_001407136.1:c.1161A>G - synonymous variant - [Sequence Ontology: SO:0001819]
NM_001407137.1:c.981A>G - synonymous variant - [Sequence Ontology: SO:0001819]
NM_001407138.1:c.906A>G - synonymous variant - [Sequence Ontology: SO:0001819]
NM_003242.6:c.1266A>G - synonymous variant - [Sequence Ontology: SO:0001819]

Condition(s)

Name:: Ehlers-Danlos syndrome (EDS)
Synonyms:: ED syndrome
Identifiers:: MONDO: MONDO:0020066; MedGen: C0013720; OMIM: PS130000

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NME1 NME/NM23 nucleoside diphosphate kinase 1 [Homo sapiens]
NME1 NME/NM23 nucleoside diphosphate kinase 1 [Homo sapiens]
Gene ID:4830

Gene
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Related DataSets for GEO Profiles (Select 105231049) (1)
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Central nervous system primitive neuroectodermal tumors
Central nervous system primitive neuroectodermal tumors
Accession: GDS4838

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV002566152	Genome Diagnostics Laboratory, The Hospital for Sick Children	criteria provided, single submitter (ACMG Guidelines, 2015)	Benign (Aug 13, 2021)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV002566152

Genome Diagnostics Laboratory, The Hospital for Sick Children

criteria provided, single submitter

(ACMG Guidelines, 2015)

Benign
(Aug 13, 2021)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Genome Diagnostics Laboratory, The Hospital for Sick Children, SCV002566152.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Oct 26, 2024

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