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NM_004387.4(NKX2-5):c.494C>T (p.Ala165Val) AND not provided

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Feb 9, 2022
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002275291.2

Allele description [Variation Report for NM_004387.4(NKX2-5):c.494C>T (p.Ala165Val)]

NM_004387.4(NKX2-5):c.494C>T (p.Ala165Val)

Gene:
NKX2-5:NK2 homeobox 5 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
5q35.1
Genomic location:
Preferred name:
NM_004387.4(NKX2-5):c.494C>T (p.Ala165Val)
HGVS:
  • NC_000005.10:g.173233050G>A
  • NG_013340.1:g.7263C>T
  • NM_001166175.2:c.*447C>T
  • NM_001166176.2:c.*293C>T
  • NM_004387.4:c.494C>TMANE SELECT
  • NP_004378.1:p.Ala165Val
  • LRG_671t1:c.494C>T
  • LRG_671:g.7263C>T
  • LRG_671p1:p.Ala165Val
  • NC_000005.9:g.172660053G>A
  • NM_004387.3:c.494C>T
Protein change:
A165V
Links:
dbSNP: rs984722259
NCBI 1000 Genomes Browser:
rs984722259
Molecular consequence:
  • NM_001166175.2:c.*447C>T - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_001166176.2:c.*293C>T - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_004387.4:c.494C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV002562606GeneDx
criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)
Uncertain significance
(Feb 9, 2022)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV002562606.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

Reported as a paternally-inherited variant in an individual with a CHD (hypoplastic left heart variant); father was unaffected by self-report (Hauser et al., 2018); In silico analysis supports that this missense variant has a deleterious effect on protein structure/function; This variant is associated with the following publications: (PMID: 29368431)

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024