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NM_000021.4(PSEN1):c.338+1del AND Alzheimer disease 3

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Aug 1, 1999
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002271335.1

Allele description [Variation Report for NM_000021.4(PSEN1):c.338+1del]

NM_000021.4(PSEN1):c.338+1del

Gene:
PSEN1:presenilin 1 [Gene - OMIM - HGNC]
Variant type:
Deletion
Cytogenetic location:
14q24.2
Genomic location:
Preferred name:
NM_000021.4(PSEN1):c.338+1del
HGVS:
  • NC_000014.9:g.73171048del
  • NG_007386.2:g.39578del
  • NG_129431.1:g.623del
  • NM_000021.4:c.338+1delMANE SELECT
  • NM_007318.3:c.326+1del
  • LRG_224t1:c.338+1del
  • LRG_224:g.39578del
  • NC_000014.8:g.73637756del
  • NC_000014.8:g.73637756delG
  • NM_000021.3:c.338+1del
Links:
OMIM: 104311.0018; dbSNP: rs63751475
NCBI 1000 Genomes Browser:
rs63751475
Molecular consequence:
  • NM_000021.4:c.338+1del - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_007318.3:c.326+1del - splice donor variant - [Sequence Ontology: SO:0001575]

Condition(s)

Name:
Alzheimer disease 3 (AD3)
Synonyms:
Alzheimer disease early onset type 3; ALZHEIMER DISEASE, FAMILIAL, 3
Identifiers:
MONDO: MONDO:0011913; MedGen: C1843013; Orphanet: 1020; OMIM: 607822

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000040068OMIM
no assertion criteria provided
Pathogenic
(Aug 1, 1999)
germlineliterature only

PubMed (2)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

A presenilin-1 truncating mutation is present in two cases with autopsy-confirmed early-onset Alzheimer disease.

Tysoe C, Whittaker J, Xuereb J, Cairns NJ, Cruts M, Van Broeckhoven C, Wilcock G, Rubinsztein DC.

Am J Hum Genet. 1998 Jan;62(1):70-6.

PubMed [citation]
PMID:
9443865
PMCID:
PMC1376799

Aberrant splicing in the presenilin-1 intron 4 mutation causes presenile Alzheimer's disease by increased Abeta42 secretion.

De Jonghe C, Cruts M, Rogaeva EA, Tysoe C, Singleton A, Vanderstichele H, Meschino W, Dermaut B, Vanderhoeven I, Backhovens H, Vanmechelen E, Morris CM, Hardy J, Rubinsztein DC, St George-Hyslop PH, Van Broeckhoven C.

Hum Mol Genet. 1999 Aug;8(8):1529-40.

PubMed [citation]
PMID:
10401002

Details of each submission

From OMIM, SCV000040068.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (2)

Description

In 2 autopsy-confirmed cases with early-onset Alzheimer disease (AD3; 607822), Tysoe et al. (1998) identified a single-base deletion of a G at the splice donor site of intron 4 of the PSEN1 gene. De Jonghe et al. (1999) identified the same mutation in 4 additional, unrelated early-onset AD cases and demonstrated that the mutation segregates in an autosomal dominant manner and that all cases have 1 common ancestor. De Jonghe et al. (1999) showed that the intron 4 mutation produces 3 different transcripts, 2 deletion transcripts (1 involving a deletion of all of exon 4 and the other involving a deletion of part of exon 4), and a transcript that results in insertion of a threonine between codons 113 and 114. The truncated proteins were not detectable in vivo in brain homogenates or in lymphoblast lysates of mutation carriers. In vitro, HEK293 cells overexpressing the insertion cDNA construct or either of the deletion constructs showed amyloid beta-42 secretion approximately 3 to 4 times greater than normal only for the insertion cDNA construct. Increased amyloid beta-42 production was also observed in brain homogenates. De Jonghe et al. (1999) concluded that in the case of the intron 4 mutation, the Alzheimer disease pathophysiology results from increased amyloid beta-42 secretion by the insertion transcript, comparable with cases carrying a dominant PSEN1 missense mutation.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: May 7, 2024