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NM_001039569.2(AP1S3):c.97C>T (p.Arg33Trp) AND not provided

Germline classification:
Benign (1 submission)
Last evaluated:
Feb 1, 2024
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002262754.12

Allele description

NM_001039569.2(AP1S3):c.97C>T (p.Arg33Trp)

Gene:
AP1S3:adaptor related protein complex 1 subunit sigma 3 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
2q36.1
Genomic location:
Preferred name:
NM_001039569.2(AP1S3):c.97C>T (p.Arg33Trp)
HGVS:
  • NC_000002.12:g.223777776G>A
  • NG_034017.1:g.64827C>T
  • NM_001039569.2:c.97C>TMANE SELECT
  • NP_001034658.1:p.Arg33Trp
  • NC_000002.11:g.224642493G>A
  • NM_001039569.1:c.97C>T
  • NR_110905.2:n.229C>T
  • NR_110906.2:n.229C>T
  • Q96PC3:p.Arg33Trp
Protein change:
R33W; ARG33TRP
Links:
UniProtKB: Q96PC3#VAR_072549; OMIM: 615781.0001; dbSNP: rs138292988
NCBI 1000 Genomes Browser:
rs138292988
Molecular consequence:
  • NM_001039569.2:c.97C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NR_110905.2:n.229C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_110906.2:n.229C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]
Observations:
11

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV002544214CeGaT Center for Human Genetics Tuebingen
criteria provided, single submitter

(CeGaT Center For Human Genetics Tuebingen Variant Classification Criteria Version 2)
Benign
(Feb 1, 2024)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyes11not providednot providednot providednot providedclinical testing

Details of each submission

From CeGaT Center for Human Genetics Tuebingen, SCV002544214.12

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided11not providednot providedclinical testingnot provided

Description

AP1S3: BS1, BS2

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot provided11not providednot providednot provided

Last Updated: Jun 17, 2024