U.S. flag

An official website of the United States government

NM_001243133.2(NLRP3):c.1562T>A (p.Met521Lys) AND Autoinflammatory syndrome

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Jul 20, 2017
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002262154.3

Allele description [Variation Report for NM_001243133.2(NLRP3):c.1562T>A (p.Met521Lys)]

NM_001243133.2(NLRP3):c.1562T>A (p.Met521Lys)

Gene:
NLRP3:NLR family pyrin domain containing 3 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
1q44
Genomic location:
Preferred name:
NM_001243133.2(NLRP3):c.1562T>A (p.Met521Lys)
HGVS:
  • NC_000001.11:g.247425011T>A
  • NG_007509.2:g.13839T>A
  • NM_001079821.3:c.1562T>A
  • NM_001127461.3:c.1562T>A
  • NM_001127462.3:c.1562T>A
  • NM_001243133.2:c.1562T>AMANE SELECT
  • NM_004895.5:c.1568T>A
  • NM_183395.3:c.1562T>A
  • NP_001073289.2:p.Met521Lys
  • NP_001120933.2:p.Met521Lys
  • NP_001120934.2:p.Met521Lys
  • NP_001230062.1:p.Met521Lys
  • NP_004886.3:p.Met523Lys
  • NP_899632.2:p.Met521Lys
  • LRG_197t1:c.1568T>A
  • LRG_197:g.13839T>A
  • NC_000001.10:g.247588313T>A
  • NM_004895.4:c.1568T>A
Protein change:
M521K
Links:
dbSNP: rs2103111391
NCBI 1000 Genomes Browser:
rs2103111391
Molecular consequence:
  • NM_001079821.3:c.1562T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001127461.3:c.1562T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001127462.3:c.1562T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001243133.2:c.1562T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_004895.5:c.1568T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_183395.3:c.1562T>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Autoinflammatory syndrome
Identifiers:
MONDO: MONDO:0019751; MedGen: C3890737

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV002542603Genome Diagnostics Laboratory, The Hospital for Sick Children
criteria provided, single submitter

(ACMG Guidelines, 2015)		Likely pathogenic
(Jul 20, 2017) 		germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Genome Diagnostics Laboratory, The Hospital for Sick Children, SCV002542603.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Dec 24, 2023