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NM_006186.4(NR4A2):c.325dup (p.Gln109fs) AND Intellectual developmental disorder with language impairment and early-onset DOPA-responsive dystonia-parkinsonism

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Jun 22, 2022
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002260695.1

Allele description [Variation Report for NM_006186.4(NR4A2):c.325dup (p.Gln109fs)]

NM_006186.4(NR4A2):c.325dup (p.Gln109fs)

Gene:
NR4A2:nuclear receptor subfamily 4 group A member 2 [Gene - OMIM - HGNC]
Variant type:
Duplication
Cytogenetic location:
2q24.1
Genomic location:
Preferred name:
NM_006186.4(NR4A2):c.325dup (p.Gln109fs)
HGVS:
  • NC_000002.12:g.156329868dup
  • NG_011821.1:g.7914dup
  • NM_006186.4:c.325dupMANE SELECT
  • NM_173173.3:c.136dup
  • NP_006177.1:p.Gln109fs
  • NP_775265.1:p.Gln46fs
  • NC_000002.11:g.157186380dup
  • NM_006186.3:c.325dup
  • NM_006186.3:c.325dupC
Protein change:
Q109fs
Links:
OMIM: 601828.0006; dbSNP: rs774629025
NCBI 1000 Genomes Browser:
rs774629025
Molecular consequence:
  • NM_006186.4:c.325dup - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_173173.3:c.136dup - frameshift variant - [Sequence Ontology: SO:0001589]

Condition(s)

Name:
Intellectual developmental disorder with language impairment and early-onset DOPA-responsive dystonia-parkinsonism (IDLDP)
Identifiers:
MONDO: MONDO:0859257; MedGen: C5677001; OMIM: 619911

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV002540594OMIM
no assertion criteria provided
Pathogenic
(Jun 22, 2022)
germlineliterature only

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

De novo variants of NR4A2 are associated with neurodevelopmental disorder and epilepsy.

Singh S, Gupta A, Zech M, Sigafoos AN, Clark KJ, Dincer Y, Wagner M, Humberson JB, Green S, van Gassen K, Brandt T, Schnur RE, Millan F, Si Y, Mall V, Winkelmann J, Gavrilova RH, Klee EW, Engleman K, Safina NP, Slaugh R, Bryant EM, et al.

Genet Med. 2020 Aug;22(8):1413-1417. doi: 10.1038/s41436-020-0815-4. Epub 2020 May 5.

PubMed [citation]
PMID:
32366965
PMCID:
PMC7394879

Details of each submission

From OMIM, SCV002540594.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (1)

Description

In a 2-year-old boy (patient 6) with intellectual developmental disorder with language impairment and early-onset dopa-responsive dystonia-parkinsonism (IDLDP; 619911), Singh et al. (2020) identified a de novo heterozygous 1-bp duplication (c.325dupC, NM_006186.3) in exon 3 of the NR4A2 gene, predicted to result in a frameshift and premature termination (Gln109ProfsTer3). The mutation, which was found by exome sequencing, was not present in the gnomAD database. Functional studies of the variant and studies of patient cells were not performed, but it was predicted to lead to nonsense-mediated mRNA decay and a loss of function with haploinsufficiency. The patient had a severe disorder with poor growth, global developmental delay, and abnormal eye movements apparent in early infancy. He developed focal seizures at age 6 months that progressed to infantile spasms and evolved to Lennox-Gastaut syndrome with refractory tonic and myoclonic seizures. Other features included hypotonia, disordered sleep, and feeding difficulties requiring tube feeding. Brain imaging showed pontine hypoplasia, enlarged ventricles, and delayed myelination.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 16, 2024