NM_015338.6(ASXL1):c.3235T>C (p.Ser1079Pro) AND Bohring-Opitz syndrome

Germline classification:: Benign (1 submission)
Last evaluated:: Dec 5, 2021
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV002260355.1

Allele description [Variation Report for NM_015338.6(ASXL1):c.3235T>C (p.Ser1079Pro)]

NM_015338.6(ASXL1):c.3235T>C (p.Ser1079Pro)

Gene:

ASXL1:ASXL transcriptional regulator 1 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

20q11.21

Genomic location:

Preferred name:

NM_015338.6(ASXL1):c.3235T>C (p.Ser1079Pro)

HGVS:

NC_000020.11:g.32435947T>C
NG_027868.1:g.82604T>C
NM_001363734.1:c.3052T>C
NM_015338.6:c.3235T>CMANE SELECT
NP_001350663.1:p.Ser1018Pro
NP_056153.2:p.Ser1079Pro
LRG_630t1:c.3235T>C
LRG_630:g.82604T>C
NC_000020.10:g.31023750T>C
NM_015338.5:c.3235T>C

Protein change:

S1018P

Links:

dbSNP: rs778886643

NCBI 1000 Genomes Browser:

rs778886643

Molecular consequence:

NM_001363734.1:c.3052T>C - missense variant - [Sequence Ontology: SO:0001583]
NM_015338.6:c.3235T>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:: Bohring-Opitz syndrome
Synonyms:: C-like syndrome; Opitz trigonocephaly-like syndrome; Bohring syndrome; See all synonyms [MedGen]
Identifiers:: MONDO: MONDO:0011510; MedGen: C0796232; Orphanet: 97297; OMIM: 605039

Recent activity

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hypothetical protein DW843_09825 [Ruminococcus sp. AM36-18]
hypothetical protein DW843_09825 [Ruminococcus sp. AM36-18]
gi|1466399107|gb|RGH56498.1||gnl|WG C|DW843_09825

Protein

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV002539526	Genome-Nilou Lab	criteria provided, single submitter (ACMG Guidelines, 2015)	Benign (Dec 5, 2021)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV002539526

Genome-Nilou Lab

criteria provided, single submitter

(ACMG Guidelines, 2015)

Benign
(Dec 5, 2021)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	no	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Genome-Nilou Lab, SCV002539526.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	no	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 29, 2024

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