NM_000251.3(MSH2):c.942+14_942+29del AND Hereditary cancer-predisposing syndrome

Germline classification:: Likely benign (1 submission)
Last evaluated:: Nov 18, 2020
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV002256726.1

Allele description [Variation Report for NM_000251.3(MSH2):c.942+14_942+29del]

NM_000251.3(MSH2):c.942+14_942+29del

Gene:

MSH2:mutS homolog 2 [Gene - OMIM - HGNC]

Variant type:

Deletion

Cytogenetic location:

2p21

Genomic location:

Preferred name:

NM_000251.3(MSH2):c.942+14_942+29del

HGVS:

NC_000002.12:g.47414432_47414447del
NG_007110.2:g.16309_16324del
NM_000251.3:c.942+14_942+29delMANE SELECT
NM_001258281.1:c.744+14_744+29del
LRG_218t1:c.942+3_942+18del
LRG_218:g.16309_16324del
NC_000002.11:g.47641571_47641586del
NM_000251.2:c.942+3_942+18del
NM_000251.2:c.942+3_942+18delAAAAAAAAAAAAAAAA

Links:

dbSNP: rs11309117

NCBI 1000 Genomes Browser:

rs11309117

Molecular consequence:

NM_000251.3:c.942+14_942+29del - intron variant - [Sequence Ontology: SO:0001627]
NM_001258281.1:c.744+14_744+29del - intron variant - [Sequence Ontology: SO:0001627]

Condition(s)

Name:: Hereditary cancer-predisposing syndrome
Synonyms:: Neoplastic Syndromes, Hereditary; Tumor predisposition; Cancer predisposition; See all synonyms [MedGen]
Identifiers:: MONDO: MONDO:0015356; MeSH: D009386; MedGen: C0027672

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV002526772	Sema4, Sema4	criteria provided, single submitter (Sema4 Curation Guidelines)	Likely benign (Nov 18, 2020)	germline	curation	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV002526772

Sema4, Sema4

criteria provided, single submitter

(Sema4 Curation Guidelines)

Likely benign
(Nov 18, 2020)

germline

curation

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	curation

Details of each submission

From Sema4, Sema4, SCV002526772.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	curation	not provided

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Nov 3, 2024

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