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NM_000527.5(LDLR):c.974G>A (p.Cys325Tyr) AND not provided

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Sep 27, 2024
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002256181.4

Allele description [Variation Report for NM_000527.5(LDLR):c.974G>A (p.Cys325Tyr)]

NM_000527.5(LDLR):c.974G>A (p.Cys325Tyr)

Gene:
LDLR:low density lipoprotein receptor [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
19p13.2
Genomic location:
Preferred name:
NM_000527.5(LDLR):c.974G>A (p.Cys325Tyr)
Other names:
NM_000527.5(LDLR):c.974G>A; p.Cys325Tyr
HGVS:
  • NC_000019.10:g.11110685G>A
  • NG_009060.1:g.26305G>A
  • NM_000527.5:c.974G>AMANE SELECT
  • NM_001195798.2:c.974G>A
  • NM_001195799.2:c.851G>A
  • NM_001195800.2:c.470G>A
  • NM_001195803.2:c.593G>A
  • NP_000518.1:p.Cys325Tyr
  • NP_000518.1:p.Cys325Tyr
  • NP_001182727.1:p.Cys325Tyr
  • NP_001182728.1:p.Cys284Tyr
  • NP_001182729.1:p.Cys157Tyr
  • NP_001182732.1:p.Cys198Tyr
  • LRG_274t1:c.974G>A
  • LRG_274:g.26305G>A
  • LRG_274p1:p.Cys325Tyr
  • NC_000019.9:g.11221361G>A
  • NM_000527.4:c.974G>A
  • c.974G>A
  • p.(Cys325Tyr)
Protein change:
C157Y
Links:
LDLR-LOVD, British Heart Foundation: LDLR_001893; dbSNP: rs879254746
NCBI 1000 Genomes Browser:
rs879254746
Molecular consequence:
  • NM_000527.5:c.974G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001195798.2:c.974G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001195799.2:c.851G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001195800.2:c.470G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001195803.2:c.593G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV002526591GeneDx
criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)
Likely pathogenic
(Sep 27, 2024)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV002526591.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

Not observed at significant frequency in large population cohorts (gnomAD); In silico analysis supports that this missense variant has a deleterious effect on protein structure/function; Published functional studies suggest a damaging effect with reduced LDLR activity compared to wild type (PMID: 21865347, 35474963); Also known as p.(C304Y); This variant is associated with the following publications: (PMID: 30526649, 19318025, 31491741, 21865347, 33079599, 29874871, 34297352, 34496902, 35474963, 32759540, 31345425, 33418990, 31947532, 33533259, 2988123, 12459547, 28353356, 32977124, Imran2024[article], 35929461)

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 8, 2024