U.S. flag

An official website of the United States government

NM_170675.5(MEIS2):c.903T>A (p.His301Gln) AND Cardiac malformation, cleft lip/palate, microcephaly, and digital anomalies

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
May 22, 2022
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002250855.1

Allele description [Variation Report for NM_170675.5(MEIS2):c.903T>A (p.His301Gln)]

NM_170675.5(MEIS2):c.903T>A (p.His301Gln)

Gene:
MEIS2:Meis homeobox 2 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
15q14
Genomic location:
Preferred name:
NM_170675.5(MEIS2):c.903T>A (p.His301Gln)
HGVS:
  • NC_000015.10:g.36950398A>T
  • NG_029108.1:g.155902T>A
  • NM_001220482.2:c.903T>A
  • NM_002399.4:c.864T>A
  • NM_170674.5:c.903T>A
  • NM_170675.5:c.903T>AMANE SELECT
  • NM_170676.5:c.903T>A
  • NM_170677.5:c.903T>A
  • NM_172315.3:c.864T>A
  • NM_172316.3:c.639T>A
  • NP_001207411.1:p.His301Gln
  • NP_002390.1:p.His288Gln
  • NP_733774.1:p.His301Gln
  • NP_733775.1:p.His301Gln
  • NP_733776.1:p.His301Gln
  • NP_733777.1:p.His301Gln
  • NP_758526.1:p.His288Gln
  • NP_758527.1:p.His213Gln
  • NC_000015.9:g.37242599A>T
Protein change:
H213Q
Links:
dbSNP: rs2141389859
NCBI 1000 Genomes Browser:
rs2141389859
Molecular consequence:
  • NM_001220482.2:c.903T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_002399.4:c.864T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_170674.5:c.903T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_170675.5:c.903T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_170676.5:c.903T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_170677.5:c.903T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_172315.3:c.864T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_172316.3:c.639T>A - missense variant - [Sequence Ontology: SO:0001583]
Observations:
1

Condition(s)

Name:
Cardiac malformation, cleft lip/palate, microcephaly, and digital anomalies
Synonyms:
CLEFT PALATE, CARDIAC DEFECTS, AND IMPAIRED INTELLECTUAL DEVELOPMENT
Identifiers:
MONDO: MONDO:0010970; MedGen: C1832950; OMIM: 600987

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV0025210033billion
criteria provided, single submitter

(ACMG Guidelines, 2015)		Uncertain significance
(May 22, 2022) 		germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyes1not providednot provided1not providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From 3billion, SCV002521003.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testing PubMed (1)

Description

The variant is not observed in the gnomAD v2.1.1 dataset. The variant is located in a mutational hot spot and/or well-established functional domain in which established pathogenic variants have been reported. In silico tool predictions suggest damaging effect of the variant on gene or gene product (REVEL: 0.78; 3Cnet: 0.87). Therefore, this variant is classified as uncertain significanceaccording to the recommendation of ACMG/AMP guideline.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyes1not providednot provided1not providednot providednot provided

Last Updated: Dec 24, 2023