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NM_000527.5(LDLR):c.440C>T (p.Thr147Ile) AND not provided

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Dec 21, 2021
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002223826.1

Allele description [Variation Report for NM_000527.5(LDLR):c.440C>T (p.Thr147Ile)]

NM_000527.5(LDLR):c.440C>T (p.Thr147Ile)

Gene:
LDLR:low density lipoprotein receptor [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
19p13.2
Genomic location:
Preferred name:
NM_000527.5(LDLR):c.440C>T (p.Thr147Ile)
Other names:
NM_000527.5(LDLR):c.440C>T; p.Thr147Ile
HGVS:
  • NC_000019.10:g.11105346C>T
  • NG_009060.1:g.20966C>T
  • NM_000527.5:c.440C>TMANE SELECT
  • NM_001195798.2:c.440C>T
  • NM_001195799.2:c.317C>T
  • NM_001195800.2:c.314-2046C>T
  • NM_001195803.2:c.314-1219C>T
  • NP_000518.1:p.Thr147Ile
  • NP_000518.1:p.Thr147Ile
  • NP_001182727.1:p.Thr147Ile
  • NP_001182728.1:p.Thr106Ile
  • LRG_274t1:c.440C>T
  • LRG_274:g.20966C>T
  • LRG_274p1:p.Thr147Ile
  • NC_000019.9:g.11216022C>T
  • NM_000527.4:c.440C>T
  • c.440C>T
  • p.(Thr147Ile)
Protein change:
T106I
Links:
LDLR-LOVD, British Heart Foundation: LDLR_000314; dbSNP: rs879254524
NCBI 1000 Genomes Browser:
rs879254524
Molecular consequence:
  • NM_001195800.2:c.314-2046C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001195803.2:c.314-1219C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_000527.5:c.440C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001195798.2:c.440C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001195799.2:c.317C>T - missense variant - [Sequence Ontology: SO:0001583]
Observations:
1

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV002502824AiLife Diagnostics, AiLife Diagnostics
criteria provided, single submitter

(ACMG Guidelines, 2015)
Likely pathogenic
(Dec 21, 2021)
germlineclinical testing

PubMed (2)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyes1not providednot providednot providednot providedclinical testing

Citations

PubMed

An improved method on stimulated T-lymphocytes to functionally characterize novel and known LDLR mutations.

Romano M, Di Taranto MD, Mirabelli P, D'Agostino MN, Iannuzzi A, Marotta G, Gentile M, Raia M, Di Noto R, Del Vecchio L, Rubba P, Fortunato G.

J Lipid Res. 2011 Nov;52(11):2095-100. doi: 10.1194/jlr.D017772. Epub 2011 Aug 24.

PubMed [citation]
PMID:
21865347
PMCID:
PMC3196240

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From AiLife Diagnostics, AiLife Diagnostics, SCV002502824.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testing PubMed (2)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot provided1not providednot providednot provided

Last Updated: Sep 1, 2024